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[192932_at] 40S ribosomal protein S10

Description D1007.6 /REP_DB=WormBase Gene ID /WP=CE09041 /GEN=rps-10 /TR=O01869 /GB=AAK18912.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=40S ribosomal protein S10
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 42      4grp_total > 17      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13501
1 2 3 4 range
A 21937.9
(-3)
P 		27449.4
(-0.4)
P 		26784.1
(-0.8)
P 		34870.5
(3)
P 		12933
B 23194.5
(-3)
P 		25055.2
(-1.7)
P 		27141
(-0.3)
P 		31977.1
(3)
P 		8783
C 21369.5
(-3)
P 		24043
(-1.7)
P 		22688.5
(-2.4)
P 		34196.7
(3)
P 		12827
avr 22167.3
(-3) 		25515.9
(-1.3) 		25537.9
(-1.2) 		33681.4
(3) 		11514

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11966
1 2 3 4 5 6 range
A 24405
(2.6)
P 		20322.2
(-1.1)
P 		24878.3
(3)
P 		20634.4
(-0.8)
P 		18227.7
(-3)
P 		18782.4
(-2.5)
P 		6651
B 20158.7
(-0.8)
P 		21232.7
(-0.3)
P 		27716
(3)
P 		19836
(-1)
P 		18136.3
(-1.8)
P 		15749.6
(-3)
P 		11966
C 19233.9
(-0.3)
P 		21373.7
(2.1)
P 		20794.4
(1.5)
P 		22152.7
(3)
P 		19022.7
(-0.5)
P 		16841
(-3)
P 		5312
avr 21265.9
(0.4) 		20976.2
(0.1) 		24462.9
(3) 		20874.4
(0.1) 		18462.2
(-1.9) 		17124.3
(-3) 		7339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2883
1 2 3 4 range
A 7987.6
(3)
P 		5958.5
(-1.2)
P 		7001.9
(0.9)
P 		5104.4
(-3)
P 		2883
B 7396.6
(3)
P 		6188
(-3)
P 		6289.2
(-2.5)
P 		6814.3
(0.1)
P 		1209
C 7073.9
(0.7)
P 		6912.5
(0.2)
P 		7907.7
(3)
P 		5766.1
(-3)
P 		2142
avr 7486
(3) 		6353
(-1.3) 		7066.3
(1.4) 		5894.9
(-3) 		1591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2914
1 2 3 4 5 6 range
A 4498.9
(-3)
P 		7227.6
(3)
P 		5418
(-1)
P 		5233.4
(-1.4)
P 		5500.3
(-0.8)
P 		4572.9
(-2.8)
P 		2729
B 7014.2
(2)
P 		7067.5
(2.1)
P 		6730.3
(1.2)
P 		5253.9
(-3)
P 		7368.6
(3)
P 		5872.9
(-1.2)
P 		2115
C 7129.2
(3)
P 		6521.8
(1.6)
P 		5292.5
(-1.1)
P 		4454.9
(-3)
P 		6155.5
(0.8)
P 		5637.7
(-0.3)
P 		2674
avr 6214.1
(0.8) 		6939
(3) 		5813.6
(-0.4) 		4980.7
(-3) 		6341.5
(1.2) 		5361.2
(-1.8) 		1958
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1894
Sequence Type Exemplar sequence
Representative Public ID D1007.6 NCBI
Target Description D1007.6 /REP_DB=WormBase Gene ID /WP=CE09041 /GEN=rps-10 /TR=O01869 /GB=AAK18912.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=40S ribosomal protein S10
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058997 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-10) (rps-10) mRNA, complete cds. 11/11 A 
SNAP00000011281 ENSEMBL cdna:SNAP chromosome:CEL140:I:4583943:4584492:-1 11/11 None
GENEFINDER00000011313 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4583943:4584492:-1 11/11 None
D1007.6.1 ENSEMBL cdna:known chromosome:CEL140:I:4583873:4584506:-1 gene:D1007.6 11/11 None
D1007.6.3 ENSEMBL cdna:known chromosome:CEL140:I:4583874:4584512:-1 gene:D1007.6 11/11 None
D1007.6.2 ENSEMBL cdna:known chromosome:CEL140:I:4583874:4584513:-1 gene:D1007.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4583942-4584492(-) 100.0 100.0
Public Domain and Genome References
Gene Title 40S ribosomal protein S10
Gene Symbol rps-10
Ensembl D1007.6
Entrez Gene 172061 Entrez gene
SwissProt O01869 EMBL-EBI
WormBase CE09041 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248331_AT 40S ribosomal protein S10 (RPS10C) at
CANINE:1583130_AT similar to 40S ribosomal protein S10 cfa
CANINE_2:CFAAFFX.2709.1.S1_S_AT similar to 40S ribosomal protein S10 cfa
DROSOPHILA_2:1622893_AT Ribosomal protein S10b dm
DROSGENOME1:151211_AT Ribosomal protein S10b dm
DROSOPHILA_2:1635528_S_AT Ribosomal protein S10b dm
DROSGENOME1:141358_AT Ribosomal protein S10b dm
MOE430A:1434854_A_AT ribosomal protein S10 mm
MOUSE430A_2:1434854_A_AT ribosomal protein S10 mm
MOUSE430_2:1434854_A_AT ribosomal protein S10 mm
MG-U74AV2:99093_AT ribosomal protein S10 mm
MOUSE430_2:1438723_A_AT ribosomal protein S10 mm
MOUSE430A_2:1438723_A_AT ribosomal protein S10 mm
MOE430A:1438723_A_AT ribosomal protein S10 mm
MOUSE430A_2:1456497_X_AT ribosomal protein S10 mm
MOE430A:1456497_X_AT ribosomal protein S10 mm
MOUSE430_2:1456497_X_AT ribosomal protein S10 mm
MU11KSUBB:W13807_AT ribosomal protein S10 mm
MOE430A:1436384_AT ribosomal protein S10 mm
MOUSE430A_2:1436384_AT ribosomal protein S10 mm
MOUSE430_2:1436384_AT ribosomal protein S10 mm
MOE430A:1416719_A_AT ribosomal protein S10 mm
MOUSE430A_2:1416719_A_AT ribosomal protein S10 mm
MOUSE430_2:1416719_A_AT ribosomal protein S10 mm
MG-U74BV2:109296_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
MU19KSUBB:TC26682_I_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
MU19KSUBB:TC26682_S_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
RG-U34A:X13549_S_AT ribosomal protein S10 rn
RAE230A:1386868_AT ribosomal protein S10 rn
RAT230_2:1386868_AT ribosomal protein S10 rn
YEAST_2:1772550_X_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 Sc
YEAST_2:1776853_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 Sc
Protein Similarities
Method ID Description E-Value
blast AAK18912 Ribosomal protein, small subunit protein 10 [Caenorhabditis elegans] ref|NP_491398.1| Ribosomal Protein, Small subunit family member (rps-10) [Caenorhabditis elegans] 3.0E-83
blast CAE74520 Hypothetical protein CBG22274 [Caenorhabditis briggsae] 5.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR005326 EMBL-EBI Plectin/S10, N-terminal 6.5E-69
Sequence
Target Sequence 
>C. ELEGANS:192932_AT
gaaaagccacaccaagctcatctatgagtacctcttcaacgagggagtgactgtcgccaa
gaaagacttcaatgccaagactcacccaaacatcgagggagtttccaaccttgaggtcat
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGCCACACCAAGCTCATCTAT 56 355 24 Antisense
AGCCACACCAAGCTCATCTATGAGT 174 85 28 Antisense
GCTCATCTATGAGTACCTCTTCAAC 236 301 39 Antisense
GAGTACCTCTTCAACGAGGGAGTGA 119 399 49 Antisense
AACGAGGGAGTGACTGTCGCCAAGA 651 143 61 Antisense
GTGACTGTCGCCAAGAAAGACTTCA 200 483 70 Antisense
GTCGCCAAGAAAGACTTCAATGCCA 535 475 76 Antisense
CCAAGACTCACCCAAACATCGAGGG 461 275 98 Antisense
ACATCGAGGGAGTTTCCAACCTTGA 103 97 113 Antisense
GAGGGAGTTTCCAACCTTGAGGTCA 567 399 118 Antisense
GAGTTTCCAACCTTGAGGTCATCAA 346 399 122 Antisense
Sequence Source Affymetrix Proprietary Database