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[192929_at] member of worm-specific protein family

Description F31F6.2 /REP_DB=WormBase Gene ID /WP=CE05774 /TR=Q19943 /GB=CAA93749.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=member of worm-specific protein family
Cluster 6grp_total > 93      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.1
(-3)
A 		2.9
(-2.1)
A 		7.5
(3)
A 		6.8
(2.2)
A 		5
B 5.8
(1.6)
A 		2.4
(-1.9)
A 		1.4
(-3)
A 		7.1
(3)
A 		6
C 2.2
(-3)
A 		2.6
(1.8)
A 		2.5
(0.6)
A 		2.7
(3)
A 		1
avr 3.4
(-1.3) 		2.6
(-3) 		3.8
(-0.5) 		5.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 6.6
(3)
A 		3.3
(-1)
A 		1.7
(-3)
A 		3.7
(-0.6)
A 		6.4
(2.8)
A 		3.6
(-0.7)
A 		5
B 4.9
(-2.5)
A 		4.2
(-2.6)
A 		1.4
(-3)
A 		2.5
(-2.8)
A 		42.4
(3)
A 		8.8
(-1.9)
A 		41
C 1.1
(-3)
A 		2.1
(-1.9)
A 		2.5
(-1.5)
A 		2
(-2)
A 		6.6
(3)
A 		5.1
(1.4)
A 		6
avr 4.2
(-2.2) 		3.2
(-2.5) 		1.9
(-3) 		2.7
(-2.7) 		18.5
(3) 		5.8
(-1.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.8
(-2.1)
A 		0.6
(-3)
A 		1.9
(3)
A 		1
(-1.2)
A 		1
B 1.9
(3)
A 		0.6
(-1.9)
A 		0.3
(-3)
A 		1.5
(1.5)
A 		2
C 0.7
(-0)
A 		0.8
(1.5)
A 		0.9
(3)
A 		0.5
(-3)
A 		0
avr 1.1
(3) 		0.7
(-3) 		1
(1.5) 		1
(1.5) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.2
(0.2)
A 		1.2
(0.2)
A 		0.4
(-3)
A 		0.9
(-1)
A 		1.9
(3)
A 		0.9
(-1)
A 		2
B 1.7
(-2.5)
A 		1.4
(-2.6)
A 		0.3
(-3)
A 		0.7
(-2.9)
A 		17.2
(3)
A 		3.3
(-1.9)
A 		17
C 0.4
(-3)
A 		0.6
(-2.3)
A 		0.6
(-2.3)
A 		0.4
(-3)
A 		2.1
(3)
A 		1.7
(1.6)
A 		2
avr 1.1
(-2.4) 		1.1
(-2.4) 		0.4
(-3) 		0.7
(-2.7) 		7.1
(3) 		2
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17979
Sequence Type Exemplar sequence
Representative Public ID F31F6.2 NCBI
Target Description F31F6.2 /REP_DB=WormBase Gene ID /WP=CE05774 /TR=Q19943 /GB=CAA93749.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=member of worm-specific protein family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078068 NCBI Caenorhabditis elegans F31F6.2 (F31F6.2) mRNA, complete cds. 11/11 None
SNAP00000015862 ENSEMBL cdna:SNAP chromosome:CEL140:X:14869523:14870592:-1 11/11 None
GENEFINDER00000015877 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14869523:14872778:-1 11/11 None
F31F6.2 ENSEMBL cdna:known chromosome:CEL140:X:14869523:14870592:-1 gene:F31F6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14869522-14870592(-) 100.0 100.0
Public Domain and Genome References
Gene Title member of worm-specific protein family
Ensembl F31F6.2
Entrez Gene 185176 Entrez gene
SwissProt Q19943 EMBL-EBI
WormBase CE05774 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93749 Hypothetical protein F31F6.2 [Caenorhabditis elegans] ref|NP_510469.1| F31F6.2 [Caenorhabditis elegans] 1.0E-169
blast CAA93750 Hypothetical protein F31F6.3 [Caenorhabditis elegans] ref|NP_510470.1| F31F6.3 [Caenorhabditis elegans] 1.0E-155
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 1.0E-120
blast CAA93750 Hypothetical protein F31F6.3 [Caenorhabditis elegans] ref|NP_510470.1| F31F6.3 [Caenorhabditis elegans] 1.0E-100
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 4.0E-78
Sequence
Target Sequence 
>C. ELEGANS:192929_AT
tggctctatccaatctttactaccagatgtcaccgactttgattgtaaaggattttgaaa
agattttccaacagtactttggtcagcttccgatgataagtggtctggaacgtaaggctc
tcgacaagctttttggcagaggaatgattgagaaatttgcatgggcggagaatgttatga
gttttggaaattctcgtgaactttctggcagaaccgttgctgtacgaccagaccatagaa
ttcttgaagtggctcgcggaactatgataagctcttcatatatttcgccaaacaagagtg
ggtcatcagttctgttgaatgaatccccgccaaccaattcgccaattgtcaaatttggca
cctacccgaaattccagctgcaagacgtttctagctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTCTATCCAATCTTTACTACCA 592 543 380 Antisense
TTTACTACCAGATGTCACCGACTTT 482 673 395 Antisense
AACAGTACTTTGGTCAGCTTCCGAT 30 137 449 Antisense
GTGGTCTGGAACGTAAGGCTCTCGA 554 487 479 Antisense
GGCTCTCGACAAGCTTTTTGGCAGA 627 539 495 Antisense
ACTTTCTGGCAGAACCGTTGCTGTA 269 103 579 Antisense
CCGTTGCTGTACGACCAGACCATAG 151 265 593 Antisense
TAAGCTCTTCATATATTTCGCCAAA 563 637 647 Antisense
CAGTTCTGTTGAATGAATCCCCGCC 328 207 686 Antisense
CCTACCCGAAATTCCAGCTGCAAGA 163 269 740 Antisense
CCAGCTGCAAGACGTTTCTAGCTCA 360 273 753 Antisense
Sequence Source Affymetrix Proprietary Database