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[192926_at] C. elegans protein C40H1.1

Description C30B5.3 /REP_DB=WormBase Gene ID /WP=CE02522 /GEN=cpb-2 /TR=Q18317 /GB=AAK31467.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=C. elegans protein C40H1.1
Cluster 6grp_total > 77      4grp_total > 27      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.8
(-1.9)
A 		4
(0.4)
A 		2.2
(-3)
A 		5.4
(3)
A 		3
B 2.4
(-3)
A 		4
(3)
A 		2.9
(-1.1)
A 		3.7
(1.9)
A 		2
C 3.7
(1.9)
A 		3.9
(3)
A 		2.8
(-3)
A 		3.7
(1.9)
A 		1
avr 3
(-1.6) 		4
(1.9) 		2.6
(-3) 		4.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 3.4
(-2.9)
A 		1.8
(-3)
A 		2.7
(-3)
A 		2.4
(-3)
A 		40.7
(-1.6)
P 		165.1
(3)
P 		163
B 2.5
(-3)
A 		2.2
(-3)
A 		3.4
(-2.9)
A 		7.2
(-2.8)
A 		34.4
(-1.4)
A 		126.7
(3)
P 		125
C 2.5
(-3)
A 		6.3
(-2.8)
A 		2.5
(-3)
A 		9.9
(-2.6)
A 		21.9
(-2)
A 		115.3
(3)
P 		113
avr 2.8
(-3) 		3.4
(-3) 		2.9
(-3) 		6.5
(-2.8) 		32.3
(-1.7) 		135.7
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1
(3)
A 		0.9
(1.5)
A 		0.6
(-3)
A 		0.8
(0)
A 		0
B 0.8
(-1)
A 		1
(3)
A 		0.7
(-3)
A 		0.8
(-1)
A 		0
C 1.2
(3)
A 		1.1
(2)
A 		1
(1)
A 		0.6
(-3)
A 		1
avr 1
(3) 		1
(3) 		0.8
(-1) 		0.7
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		12.3
(-1.2)
P 		40.2
(3)
P 		40
B 0.9
(-3)
A 		0.7
(-3)
A 		0.8
(-3)
A 		1.9
(-2.8)
A 		14
(-1.3)
A 		47.2
(3)
P 		47
C 0.9
(-3)
A 		1.9
(-2.8)
A 		0.6
(-3)
A 		2
(-2.8)
A 		7.1
(-2)
A 		38.6
(3)
P 		38
avr 0.8
(-3) 		1.1
(-2.9) 		0.7
(-3) 		1.5
(-2.9) 		11.1
(-1.5) 		42
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4964
Sequence Type Exemplar sequence
Representative Public ID C30B5.3 NCBI
Target Description C30B5.3 /REP_DB=WormBase Gene ID /WP=CE02522 /GEN=cpb-2 /TR=Q18317 /GB=AAK31467.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=C. elegans protein C40H1.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062835 NCBI Caenorhabditis elegans CPEB polyA binding family member (cpb-2) (cpb-2) mRNA, complete cds. 11/11 None
SNAP00000017614 ENSEMBL cdna:SNAP chromosome:CEL140:II:6192882:6195084:1 11/11 None
GENEFINDER00000017629 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6192882:6195084:1 11/11 None
C30B5.3 ENSEMBL cdna:known chromosome:CEL140:II:6192786:6195091:1 gene:C30B5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6193663-6195081(+) 100.0 100.0
Public Domain and Genome References
Gene Title C. elegans protein C40H1.1
Gene Symbol cpb-2
Ensembl C30B5.3
Entrez Gene 174027 Entrez gene
SwissProt Q18317 EMBL-EBI
WormBase CE34717 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31467 Cpeb polya binding family protein 2 [Caenorhabditis elegans] ref|NP_495236.2| CPEB polyA binding family member (cpb-2) [Caenorhabditis elegans] sp|Q18317|CPB2_CAEEL Cytoplasmic polyadenylation element binding protein 0.0
blast AAT72449 CPB-2 [Caenorhabditis remanei] gb|AAT72420.1| CPB-2 [Caenorhabditis remanei] sp|Q6E3F2|CPB2_CAERE Cytoplasmic polyadenylation element binding protein 0.0
blast AAT72450 CPB-2 [Caenorhabditis sp. CB5161] gb|AAT72421.1| CPB-2 [Caenorhabditis sp. CB5161] 0.0
Sequence
Target Sequence 
>C. ELEGANS:192926_AT
agagacagcatcaccttggatacgtgtttctccttttcgagaaagaacgaagtgttcgtg
atttggttttggattgtttcgaagaagaagaaggacttttcatcactttggaaagttcga
ctgattcaattcgtgtgcagattcgtccatggttgttggcagatgctgagttccttatgg
atttcaatgttcccatcaacacaaaacttgtggcatttattggtggtgttccgagaccgt
tgaaagcagtcgagttggctcatttcttcgagcaaacttatgggcatgttgtgtgtgttg
gcattgatatcgacaataaatttaaatatccacgtggatccggacgtgttgctttctctg
actacgatgcgtacgttcaagcaatcactgatcgttatattgttctggatcatgaggata
ttcacaagagggtggagatcaagccatacttctttcacaaccaatcttgcgaggaatgtt
cgggtcgttatcatcgtcaacatgctccatacttctgtccatctcttgagtgcttccagt
actactgtgagccgtgttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGACAGCATCACCTTGGATACGT 205 69 629 Antisense
TTGGATACGTGTTTCTCCTTTTCGA 106 709 644 Antisense
ATTCGTGTGCAGATTCGTCCATGGT 679 9 757 Antisense
GGCAGATGCTGAGTTCCTTATGGAT 327 535 786 Antisense
GTGGTGTTCCGAGACCGTTGAAAGC 492 435 851 Antisense
GCAGTCGAGTTGGCTCATTTCTTCG 550 311 874 Antisense
CGTGTTGCTTTCTCTGACTACGATG 155 245 973 Antisense
GATCAAGCCATACTTCTTTCACAAC 596 421 1065 Antisense
GTTCGGGTCGTTATCATCGTCAACA 59 439 1106 Antisense
TCCATCTCTTGAGTGCTTCCAGTAC 674 589 1146 Antisense
CAGTACTACTGTGAGCCGTGTTGGC 558 207 1165 Antisense
Sequence Source Affymetrix Proprietary Database