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[192925_at] 7TM receptor

Description C51E3.4 /REP_DB=WormBase Gene ID /WP=CE08937 /TR=Q18769 /GB=CAB01639.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=thyrotropin-releasing hormone receptor
Cluster 6grp_total > 21      4grp_total > 0      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 10.8
(-2.6)
A 		5.8
(-3)
A 		39.9
(-0.1)
A 		77.5
(3)
P 		72
B 34.9
(1.2)
A 		6.6
(-3)
A 		32.3
(0.9)
A 		46.6
(3)
A 		40
C 29.8
(-1)
P 		6.5
(-2.7)
A 		2.5
(-3)
A 		86.3
(3)
A 		84
avr 25.2
(-1.2) 		6.3
(-3) 		24.9
(-1.3) 		70.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 5.9
(-2.7)
A 		29.4
(-0.1)
A 		57.9
(3)
A 		26.2
(-0.5)
A 		35.9
(0.6)
A 		2.8
(-3)
A 		55
B 36.6
(2.6)
A 		3.1
(-3)
A 		38.7
(3)
A 		22.5
(0.3)
A 		16.1
(-0.8)
A 		9.8
(-1.9)
A 		36
C 5.2
(-3)
A 		58.2
(3)
A 		5
(-3)
A 		8.4
(-2.6)
A 		4.9
(-3)
A 		5.8
(-2.9)
A 		53
avr 15.9
(-0.9) 		30.2
(2.2) 		33.9
(3) 		19
(-0.2) 		19
(-0.2) 		6.1
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.9
(-1.4)
A 		1.3
(-3)
A 		10.4
(2.5)
A 		11.3
(3)
P 		10
B 11.1
(3)
A 		1.6
(-3)
A 		7.5
(0.7)
A 		9.9
(2.2)
A 		10
C 9.9
(0.9)
P 		1.9
(-2.6)
A 		0.9
(-3)
A 		14.6
(3)
A 		14
avr 8.3
(0.9) 		1.6
(-3) 		6.3
(-0.3) 		11.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		10.5
(1.9)
A 		12.6
(3)
A 		6.6
(-0)
A 		10.8
(2.1)
A 		0.7
(-3)
A 		12
B 12.7
(3)
A 		1
(-3)
A 		9.4
(1.3)
A 		5.9
(-0.5)
A 		6.5
(-0.2)
A 		3.6
(-1.7)
A 		12
C 1.9
(-2.8)
A 		17.7
(3)
A 		1.3
(-3)
A 		1.7
(-2.9)
A 		1.6
(-2.9)
A 		2
(-2.7)
A 		16
avr 5.2
(-0.6) 		9.7
(3) 		7.8
(1.5) 		4.7
(-0.9) 		6.3
(0.3) 		2.1
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12511
Sequence Type Exemplar sequence
Representative Public ID C51E3.4 NCBI
Target Description C51E3.4 /REP_DB=WormBase Gene ID /WP=CE08937 /TR=Q18769 /GB=CAB01639.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=thyrotropin-releasing hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073210 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-29) (srsx-29) mRNA, complete cds. 11/11 None
GENEFINDER00000031205 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10155164:10162878:1 11/11 None
C51E3.4 ENSEMBL cdna:known chromosome:CEL140:V:10157634:10158962:1 gene:C51E3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031201 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10157205-10158777(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol srsx-29
Ensembl C51E3.4
Entrez Gene 183706 Entrez gene
SwissProt Q18769 EMBL-EBI
WormBase CE37814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01640 Hypothetical protein C51E3.3 [Caenorhabditis elegans] ref|NP_505610.2| Serpentine Receptor, class SX family member (srsx-28) [Caenorhabditis elegans] 1.0E-173
blast CAB01637 Hypothetical protein C51E3.5 [Caenorhabditis elegans] ref|NP_505612.2| Serpentine Receptor, class SX family member (srsx-30) [Caenorhabditis elegans] 1.0E-170
blast CAB01639 Hypothetical protein C51E3.4 [Caenorhabditis elegans] ref|NP_505611.2| Serpentine Receptor, class SX family member (srsx-29) [Caenorhabditis elegans] 1.0E-167
blast CAE64745 Hypothetical protein CBG09533 [Caenorhabditis briggsae] 1.0E-153
blast CAE64744 Hypothetical protein CBG09532 [Caenorhabditis briggsae] 1.0E-152
blast CAB01640 Hypothetical protein C51E3.3 [Caenorhabditis elegans] ref|NP_505610.2| Serpentine Receptor, class SX family member (srsx-28) [Caenorhabditis elegans] 1.0E-109
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505611.2 7 10-32,44-66,81-103,124-146,172-194,206-228,243-265
C51E3.4 7 10-32,44-66,81-103,124-146,172-194,206-228,243-265
GENEFINDER00000031205 20 10-32,44-66,81-103,124-146,172-194,206-228,243-265,350-372,387-409,430-452,478-500,512-534,549-571,617-639,649-671,684-706,726-748,772-794,809-831,844-866
Sequence
Target Sequence 
>C. ELEGANS:192925_AT
gggggttgatagactgattgctgtgaaatttccaacaaagtatcgactgttccaacaaga
acccaagcattatattcttggccaacttgtatttccaatcgcgtacacggctattcttct
ctattacggattcgcaaataaaatagttgatgagaaactacaagtcgcatgtgcagtacc
ccttgcattaatgggaacttcctttcagtttttcacttattcaagcgccttgatttattt
tttggtagttatcgtgtacgggattgtttattttcttttgaaatcgaatcaagcaagtaa
gatttcaaatttaacaaaatggtttttggaaattagaaactgtgtaaaatattggaaaaa
ctcaaacctcaaaacaaattcaactcaatttatgtacgtttttttcacttttacaaaaat
atgtgccagattcaaaagtgttttccgttcaatattggtaactgttggttttgttttatt
cggttgggtaacgacaactctaacaaatacattatcttatgaaataacttctgttgcatt
cactgctcaattaatgcaaatgtatgctggaattacagtaaattttgcagcggcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGGTTGATAGACTGATTGCTGTG 84 499 516 Antisense
GTATCGACTGTTCCAACAAGAACCC 526 453 555 Antisense
AAGCATTATATTCTTGGCCAACTTG 26 151 580 Antisense
GGCCAACTTGTATTTCCAATCGCGT 452 543 595 Antisense
CAATCGCGTACACGGCTATTCTTCT 569 179 611 Antisense
TATTCTTCTCTATTACGGATTCGCA 334 663 627 Antisense
TACAAGTCGCATGTGCAGTACCCCT 41 641 674 Antisense
GCAGTACCCCTTGCATTAATGGGAA 135 255 688 Antisense
GTTTTTCACTTATTCAAGCGCCTTG 690 447 723 Antisense
ATAACTTCTGTTGCATTCACTGCTC 342 25 1039 Antisense
TACAGTAAATTTTGCAGCGGCTTCA 494 641 1089 Antisense
Sequence Source Affymetrix Proprietary Database