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[192918_at] Zinc finger, C3HC4 type (RING finger)

Description F35G12.9 /REP_DB=WormBase Gene ID /WP=CE00978 /TR=Q20052 /GB=CAA86328.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 93      6grp_total > 88      4grp_total > 04      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 519
1 2 3 4 range
A 366.8
(0.3)
P 		346.3
(-0.2)
P 		239.1
(-3)
P 		470
(3)
P 		231
B 356
(-1.5)
P 		292.4
(-3)
P 		291.3
(-3)
P 		555.8
(3)
P 		265
C 414.9
(-1.5)
P 		303.9
(-3)
P 		300.5
(-3)
P 		758.1
(3)
P 		458
avr 379.2
(-1.1) 		314.2
(-2.3) 		277
(-3) 		594.6
(3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 594
1 2 3 4 5 6 range
A 290.1
(-2.5)
P 		273.5
(-3)
P 		493.7
(3)
P 		421.2
(1)
P 		433.8
(1.4)
P 		437.5
(1.5)
P 		220
B 450.9
(-1.4)
P 		477.6
(-1)
P 		440.9
(-1.5)
P 		345.3
(-3)
P 		592.2
(0.8)
P 		738.3
(3)
P 		393
C 343.9
(-1.4)
P 		445.4
(-0.4)
P 		186.3
(-3)
P 		350.5
(-1.3)
P 		457.5
(-0.3)
P 		780.4
(3)
P 		594
avr 361.6
(-3) 		398.8
(-2.2) 		373.6
(-2.8) 		372.3
(-2.8) 		494.5
(-0.3) 		652.1
(3) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 133.5
(3)
P 		75.2
(-1.9)
P 		62.5
(-3)
P 		68.8
(-2.5)
P 		71
B 113.5
(2.4)
P 		72.2
(-2.4)
P 		67.5
(-3)
P 		118.4
(3)
P 		51
C 137.4
(3)
P 		87.4
(-3)
P 		104.7
(-0.9)
P 		127.8
(1.8)
P 		50
avr 128.1
(3) 		78.3
(-3) 		78.2
(-3) 		105
(0.2) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 53.5
(-3)
P 		97.3
(0.4)
P 		107.5
(1.2)
P 		106.8
(1.1)
P 		130.9
(3)
P 		106.5
(1.1)
P 		77
B 156.9
(-0.9)
P 		159
(-0.8)
P 		107.1
(-2.5)
P 		91.5
(-3)
P 		240.6
(1.9)
P 		275.3
(3)
P 		184
C 127.5
(-0.8)
P 		135.9
(-0.5)
P 		47.4
(-3)
P 		70.5
(-2.4)
P 		148
(-0.2)
P 		261.2
(3)
P 		214
avr 112.6
(-1.8) 		130.7
(-0.9) 		87.3
(-3) 		89.6
(-2.9) 		173.2
(1.1) 		214.3
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7962
Sequence Type Exemplar sequence
Representative Public ID F35G12.9 NCBI
Target Description F35G12.9 /REP_DB=WormBase Gene ID /WP=CE00978 /TR=Q20052 /GB=CAA86328.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065536 NCBI Caenorhabditis elegans Anaphase Promoting Complex; see also mat family member (apc-11) (apc-11) mRNA, complete cds. 11/11 None
SNAP00000042245 ENSEMBL cdna:SNAP chromosome:CEL140:III:4593887:4594387:-1 11/11 None
GENEFINDER00000042260 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4593887:4594387:-1 11/11 None
F35G12.9 ENSEMBL cdna:known chromosome:CEL140:III:4593734:4594387:-1 gene:F35G12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4593886-4594387(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Gene Symbol apc-11
Ensembl F35G12.9
Entrez Gene 175604 Entrez gene
SwissProt Q20052 EMBL-EBI
WormBase CE00978 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86328 Hypothetical protein F35G12.9 [Caenorhabditis elegans] ref|NP_497937.1| Anaphase Promoting Complex; see also mat family member (apc-11) [Caenorhabditis elegans] 1.0E-80
blast CAE71175 Hypothetical protein CBG18032 [Caenorhabditis briggsae] 1.0E-51
blast AAL13436 anaphase promoting complex subunit 11 [Arabidopsis thaliana] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.0E-6
Sequence
Target Sequence 
>C. ELEGANS:192918_AT
atatgtcgatgagcagttctgaacttcatactatgcaggatgatcatccagggattctat
taaaaaccaacactcggatgagcattaccgtcaaaaagttacatgtttgtggagagtgga
agtggttacaaggaggtgaagatacctgtggaatttgtcgaatggaatttgaatcggcgt
gcaacatgtgcaagtttccaggagatgattgcccattggttctgggaatttgtcgccatg
cttttcatcgtcattgcatcgataagtggattgcagcaccaactaaccaaccaagagctc
aatgcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGTCGATGAGCAGTTCTGAACT 614 19 80 Antisense
GTTCTGAACTTCATACTATGCAGGA 473 441 95 Antisense
GATTCTATTAAAAACCAACACTCGG 35 429 132 Antisense
AACACTCGGATGAGCATTACCGTCA 244 135 148 Antisense
GATACCTGTGGAATTTGTCGAATGG 26 425 220 Antisense
GAATTTGAATCGGCGTGCAACATGT 465 325 244 Antisense
GCAACATGTGCAAGTTTCCAGGAGA 481 319 260 Antisense
GGAGATGATTGCCCATTGGTTCTGG 339 519 280 Antisense
GGTTCTGGGAATTTGTCGCCATGCT 493 507 297 Antisense
TGGATTGCAGCACCAACTAACCAAC 167 551 346 Antisense
TAACCAACCAAGAGCTCAATGCCCG 87 635 363 Antisense
Sequence Source Affymetrix Proprietary Database