[Home] | [Total List]

[192917_s_at] ubiquitin carboxyl-terminal hydrolase

Description F07A11.4 /REP_DB=WormBase Gene ID /WP=CE03146 /TR=Q19132 /GB=CAA91317.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 24      4grp_highest_8_8 > 33      4grp_high_8_8 > 59      6grp_highest_nonorm > 61      6grp_total > 12      4grp_total > 60      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 427.6
(1.7)
P 		417.1
(1.3)
P 		456.4
(3)
P 		320.8
(-3)
P 		136
B 469.5
(2.8)
P 		478
(3)
P 		439
(2)
P 		250.7
(-3)
P 		227
C 442.9
(3)
P 		377.3
(0.2)
P 		436.9
(2.7)
P 		304.2
(-3)
P 		139
avr 446.7
(3) 		424.1
(2.1) 		444.1
(2.9) 		291.9
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 384.7
(-1.1)
P 		574.6
(3)
P 		387.3
(-1)
P 		338
(-2.1)
P 		331.1
(-2.2)
P 		293.6
(-3)
P 		281
B 429.6
(0.9)
P 		508.4
(3)
P 		320
(-1.9)
P 		326.9
(-1.8)
P 		280.2
(-3)
P 		279.6
(-3)
P 		229
C 450.4
(2)
P 		504.1
(3)
P 		433.2
(1.7)
P 		261.8
(-1.3)
P 		312.7
(-0.4)
P 		169.4
(-3)
P 		335
avr 421.6
(0.7) 		529
(3) 		380.2
(-0.2) 		308.9
(-1.7) 		308
(-1.7) 		247.5
(-3) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 155.7
(3)
P 		90.5
(-0.6)
P 		119.3
(1)
P 		47
(-3)
P 		109
B 149.7
(3)
P 		118.1
(1)
P 		101.7
(0)
P 		53.4
(-3)
P 		96
C 146.6
(2.7)
P 		108.5
(0.4)
P 		152.3
(3)
P 		51.3
(-3)
P 		101
avr 150.7
(3) 		105.7
(0.3) 		124.4
(1.4) 		50.6
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 70.9
(-3)
P 		204.3
(3)
P 		84.3
(-2.4)
P 		85.7
(-2.3)
P 		99.9
(-1.7)
P 		71.5
(-3)
P 		133
B 149.5
(1.7)
P 		169.2
(3)
P 		77.7
(-3)
P 		86.6
(-2.4)
P 		113.8
(-0.6)
P 		104.2
(-1.3)
P 		92
C 167
(3)
P 		153.8
(2.3)
P 		110.3
(0)
P 		52.6
(-3)
P 		101.2
(-0.5)
P 		56.7
(-2.8)
P 		114
avr 129.1
(0.2) 		175.8
(3) 		90.8
(-2.1) 		75
(-3) 		105
(-1.2) 		77.5
(-2.9) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192917_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3956
Sequence Type Exemplar sequence
Representative Public ID F07A11.4 NCBI
Target Description F07A11.4 /REP_DB=WormBase Gene ID /WP=CE03146 /TR=Q19132 /GB=CAA91317.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064081 NCBI Caenorhabditis elegans F07A11.4 (F07A11.4) mRNA, complete cds. 11/11 None
SNAP00000044554 ENSEMBL cdna:SNAP chromosome:CEL140:II:11603860:11611209:1 11/11 None
GENEFINDER00000044563 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11603860:11611209:1 11/11 None
F07A11.4 ENSEMBL cdna:known chromosome:CEL140:II:11603860:11611329:1 gene:F07A11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11603856-11611206(+) 98.91 100.0
Public Domain and Genome References
Gene Title ubiquitin carboxyl-terminal hydrolase
Ensembl F07A11.4
Entrez Gene 174780 Entrez gene
SwissProt Q19132 EMBL-EBI
WormBase CE03146 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6511 ubiquitin-dependent protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4221 ubiquitin thiolesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91317 Hypothetical protein F07A11.4 [Caenorhabditis elegans] ref|NP_496482.1| F07A11.4 [Caenorhabditis elegans] 0.0
blast CAE59464 Hypothetical protein CBG02847 [Caenorhabditis briggsae] 0.0
blast XP_689922 PREDICTED: similar to ubiquitin-specific protease 19 [Danio rerio] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 3.7E-20
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192917_S_AT
ggagacgaatccacatctcacacaaatgcttgacttgttctcggaaactgagaggttgaa
accagaagagagttggtattgctcgacgtgcaaagagaatgtggaggctaccaagaagct
tcagttgtataggttgccgcctgttctgatcattcagttgaagagattcgtctatacagc
attcacttatcaatcatcaatggctcgtcgaagcaaggacacccgatcagttgagtatcc
attggagagtcttgatatgtctccgtttttagcagaaacatctccacatcctaattcaac
gatgtatgatctaacgggagtagtatgccatagtggaaacagttacttcggtcattatat
tagtatgggtcgactcgccgattttgattcgtcgaaaacgaaaatcgaatggaggaattt
cgatgattcgacggtggctcggcagtctacgagcactttacaaacggaggatgcttactt
actcttctataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGACGAATCCACATCTCACACAA 388 519 2724 Antisense
AAATGCTTGACTTGTTCTCGGAAAC 424 119 2747 Antisense
GCTTCAGTTGTATAGGTTGCCGCCT 396 305 2841 Antisense
ATGGCTCGTCGAAGCAAGGACACCC 524 53 2923 Antisense
GACACCCGATCAGTTGAGTATCCAT 358 367 2941 Antisense
GTCTTGATATGTCTCCGTTTTTAGC 50 469 2972 Antisense
GAAACATCTCCACATCCTAATTCAA 135 357 2998 Antisense
GTCGACTCGCCGATTTTGATTCGTC 15 475 3092 Antisense
TCGATGATTCGACGGTGGCTCGGCA 244 603 3143 Antisense
TCGGCAGTCTACGAGCACTTTACAA 104 607 3162 Antisense
AGGATGCTTACTTACTCTTCTATAA 141 57 3191 Antisense
Sequence Source Affymetrix Proprietary Database