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[192913_at] BTB (also known as BR-C/Ttk) domain.

Description Y43E12A.3 /REP_DB=WormBase Gene ID /WP=CE16621 /TR=O45927 /GB=CAA15976.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster 6grp_total > 88      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 67.5
(2.3)
M 		73.8
(3)
A 		44.6
(-0.4)
A 		21.9
(-3)
A 		52
B 67.8
(-0.6)
P 		102.7
(3)
A 		45
(-3)
A 		98.2
(2.5)
P 		58
C 77
(-1.9)
A 		88.4
(-0.7)
A 		67.2
(-3)
A 		122.2
(3)
A 		55
avr 70.8
(0.1) 		88.3
(3) 		52.3
(-3) 		80.8
(1.8) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 77.9
(-2.2)
A 		34.6
(-3)
A 		57.6
(-2.6)
A 		115
(-1.5)
A 		280.2
(1.5)
P 		359.9
(3)
P 		325
B 76.7
(-2.3)
A 		91.6
(-2)
A 		40.5
(-3)
A 		76.6
(-2.3)
P 		225.5
(0.5)
P 		360.4
(3)
P 		320
C 48.3
(-3)
A 		83.3
(-2.5)
A 		51.3
(-3)
A 		94.8
(-2.3)
P 		195.9
(-0.8)
P 		455.2
(3)
P 		407
avr 67.6
(-2.7) 		69.8
(-2.6) 		49.8
(-3) 		95.5
(-2.2) 		233.9
(0.2) 		391.8
(3) 		342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 24.6
(3)
M 		16
(0.6)
A 		11.7
(-0.6)
A 		3.2
(-3)
A 		21
B 21.6
(1.5)
P 		25.4
(3)
A 		10.4
(-3)
A 		20.9
(1.2)
P 		15
C 25.5
(3)
A 		25.4
(2.9)
A 		23.4
(0.4)
A 		20.6
(-3)
A 		5
avr 23.9
(3) 		22.3
(1.9) 		15.2
(-2.8) 		14.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 14.4
(-2.8)
A 		12.3
(-3)
A 		12.6
(-3)
A 		29.2
(-1.7)
A 		84.6
(2.8)
P 		87.6
(3)
P 		75
B 26.7
(-2.2)
A 		30.5
(-2)
A 		9.8
(-3)
A 		20.3
(-2.5)
P 		91.6
(0.9)
P 		134.4
(3)
P 		125
C 17.9
(-2.8)
A 		25.4
(-2.5)
A 		13.1
(-3)
A 		19.1
(-2.7)
P 		63.4
(-0.8)
P 		152.4
(3)
P 		139
avr 19.7
(-2.6) 		22.7
(-2.4) 		11.8
(-3) 		22.9
(-2.4) 		79.9
(0.6) 		124.8
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192913_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9068
Sequence Type Exemplar sequence
Representative Public ID Y43E12A.3 NCBI
Target Description Y43E12A.3 /REP_DB=WormBase Gene ID /WP=CE16621 /TR=O45927 /GB=CAA15976.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069647 NCBI Caenorhabditis elegans Y43E12A.3 (Y43E12A.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000002301 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10987878:10990848:1 11/11 None
Y43E12A.3 ENSEMBL cdna:known chromosome:CEL140:IV:10987876:10989335:1 gene:Y43E12A.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031643 1/11 Cross Hyb Matching Probes None
SNAP00000031639 4/11 Cross Hyb Matching Probes None
SNAP00000002299 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10987883-10989341(+) 100.0 100.0
chrI:4116851-4118292(+) 95.24 95.24
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain.
Ensembl Y43E12A.3
Entrez Gene 177995 Entrez gene
SwissProt O45927 EMBL-EBI
WormBase CE16621 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15976 Hypothetical protein Y43E12A.3 [Caenorhabditis elegans] ref|NP_502048.1| Y43E12A.3 [Caenorhabditis elegans] 0.0
blast CAA15976 Hypothetical protein Y43E12A.3 [Caenorhabditis elegans] ref|NP_502048.1| Y43E12A.3 [Caenorhabditis elegans] 1.0E-160
blast CAE61969 Hypothetical protein CBG05970 [Caenorhabditis briggsae] 2.0E-67
blast CAE61969 Hypothetical protein CBG05970 [Caenorhabditis briggsae] 7.0E-66
blast AAK21416 Hypothetical protein H31G24.3 [Caenorhabditis elegans] ref|NP_491298.1| H31G24.3 [Caenorhabditis elegans] 8.0E-55
blast AAK21416 Hypothetical protein H31G24.3 [Caenorhabditis elegans] ref|NP_491298.1| H31G24.3 [Caenorhabditis elegans] 9.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.6E-18
Sequence
Target Sequence 
>C. ELEGANS:192913_AT
gaaatccatctctgtgttcacatatttatgcagataaatcagtcaaaaggaattcaactt
cggaactacatcgacttcgcacgaccaatccccattttttcagacactatagttctggtg
gatggcgttaaattccatgtaaatcgaatgattctctcaatggcttcgcctatcttcttg
gaagcatttgtcactaatttcgatgaaagatccttggagttgtgcaatatctctgcgccg
gattttcgtcgaattcttaacattatctatccacctcatctgcctccaaagcagtggatc
aaagagagtgatttggttgagcaattcgaacacattcaacggattcttcgaattggaaaa
tcacttcaaatttcaatcgtgttggaagttgctgacaaatggctggttaaatacgggcgg
cacaaattaggagacacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCCATCTCTGTGTTCACATAT 544 361 367 Antisense
GGAATTCAACTTCGGAACTACATCG 268 533 415 Antisense
TCGGAACTACATCGACTTCGCACGA 323 605 426 Antisense
CAATCCCCATTTTTTCAGACACTAT 358 179 452 Antisense
GAATGATTCTCTCAATGGCTTCGCC 9 333 512 Antisense
TGGCTTCGCCTATCTTCTTGGAAGC 604 543 527 Antisense
GGAAGCATTTGTCACTAATTTCGAT 496 531 546 Antisense
TGGAGTTGTGCAATATCTCTGCGCC 409 549 581 Antisense
TCTTAACATTATCTATCCACCTCAT 296 615 621 Antisense
ACCTCATCTGCCTCCAAAGCAGTGG 709 87 639 Antisense
GGGCGGCACAAATTAGGAGACACAC 26 491 781 Antisense
Sequence Source Affymetrix Proprietary Database