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[192912_at] Vertebrate galactoside-binding lectins

Description F41D3.6 /REP_DB=WormBase Gene ID /WP=CE16025 /TR=O45510 /GB=CAB04377.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Vertebrate galactoside-binding lectins
Cluster 6grp_total > 81      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.7
(-3)
A 		5.2
(0.8)
A 		3.5
(-1.8)
A 		6.7
(3)
A 		4
B 3.9
(-2.7)
A 		4
(-2.6)
A 		11.9
(3)
A 		3.5
(-3)
A 		8
C 3.8
(3)
A 		3.4
(1)
A 		2.6
(-3)
A 		3
(-1)
A 		1
avr 3.5
(-3) 		4.2
(-1.3) 		6
(3) 		4.4
(-0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 7.4
(-1.9)
A 		2.2
(-3)
A 		8.8
(-1.6)
A 		31.6
(3)
A 		12.2
(-0.9)
A 		2
(-3)
A 		30
B 4.9
(-0.9)
A 		3.2
(-2.3)
A 		2.3
(-3)
A 		6.1
(0.1)
A 		9.6
(3)
A 		2.6
(-2.8)
A 		7
C 2.9
(-2.5)
A 		9.5
(3)
A 		8.4
(2.1)
A 		8.3
(2)
A 		2.3
(-3)
A 		3
(-2.4)
A 		7
avr 5.1
(-1.8) 		5
(-1.8) 		6.5
(-1.1) 		15.3
(3) 		8
(-0.4) 		2.5
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(-0)
A 		1.1
(3)
A 		0.9
(-3)
A 		1
(-0)
A 		0
B 1.2
(-1.6)
A 		1
(-2.1)
A 		2.8
(3)
A 		0.7
(-3)
A 		2
C 1.2
(3)
A 		1
(1.3)
A 		0.9
(0.4)
A 		0.5
(-3)
A 		1
avr 1.1
(0) 		1
(-0.8) 		1.5
(3) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.4
(-2.3)
A 		0.8
(-2.8)
A 		1.9
(-1.9)
A 		8
(3)
A 		3.7
(-0.4)
A 		0.5
(-3)
A 		8
B 1.7
(-1)
A 		1.1
(-2.1)
A 		0.6
(-3)
A 		1.6
(-1.2)
A 		3.9
(3)
A 		1
(-2.3)
A 		3
C 1.1
(-1.9)
A 		2.9
(3)
A 		2.1
(0.8)
A 		1.7
(-0.3)
A 		0.7
(-3)
A 		1
(-2.2)
A 		2
avr 1.4
(-1.8) 		1.6
(-1.4) 		1.5
(-1.6) 		3.8
(3) 		2.8
(1) 		0.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2504
Sequence Type Exemplar sequence
Representative Public ID F41D3.6 NCBI
Target Description F41D3.6 /REP_DB=WormBase Gene ID /WP=CE16025 /TR=O45510 /GB=CAB04377.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Vertebrate galactoside-binding lectins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060694 NCBI Caenorhabditis elegans F41D3.6 (F41D3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000037790 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12266725:12272504:-1 11/11 None
SNAP00000037772 ENSEMBL cdna:SNAP chromosome:CEL140:I:12271824:12274389:-1 11/11 None
GENEFINDER00000044668 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12287682:12289190:1 11/11 None
SNAP00000044648 ENSEMBL cdna:SNAP chromosome:CEL140:I:12287980:12288554:1 11/11 None
F41D3.6 ENSEMBL cdna:known chromosome:CEL140:I:12271824:12274389:-1 gene:F41D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12286984-12288485(+) 43.18 46.31
chrI:12271754-12274320(-) 96.87 100.0
Public Domain and Genome References
Gene Title Vertebrate galactoside-binding lectins
Ensembl F41D3.6
Entrez Gene 185606 Entrez gene
WormBase CE16025 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04377 Hypothetical protein F41D3.6 [Caenorhabditis elegans] ref|NP_493095.1| F41D3.6 [Caenorhabditis elegans] 0.0
blast CAB04376 Hypothetical protein F41D3.10 [Caenorhabditis elegans] emb|CAB04381.2| Hypothetical protein F41D3.5 [Caenorhabditis elegans] ref|NP_493098.1| F41D3.10 [Caenorhabditis elegans] ref|NP_493094.1| F41D3.5 [Caenorhabditis elegans] 0.0
blast CAB04108 Hypothetical protein F14B6.5 [Caenorhabditis elegans] ref|NP_493089.2| F14B6.5 [Caenorhabditis elegans] 0.0
blast AAB66028 Hypothetical protein C17A2.5 [Caenorhabditis elegans] ref|NP_494665.1| C17A2.5 [Caenorhabditis elegans] 1.0E-160
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 4.0E-99
blast CAB04377 Hypothetical protein F41D3.6 [Caenorhabditis elegans] ref|NP_493095.1| F41D3.6 [Caenorhabditis elegans] 2.0E-95
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 1.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.3E-6
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.3E-6
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 4.5E-7
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 7.6E-7
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.3E-6
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 6.5E-5
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.3E-6
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 4.8E-101
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 4.5E-7
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 7.6E-7
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.3E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493095.1 1 17-39
F41D3.6 1 17-39
GENEFINDER00000037790 8 161-183,211-230,272-294,301-318,358-380,401-423,433-452,457-479
Sequence
Target Sequence 
>C. ELEGANS:192912_AT
ttttcaaaggattcccctctggatccttccagagaggtcagaggatcctcctctacgccc
gtccaaagactgggccaaacgctagtcaaatgaccgtaaatctttatgcctacaatcaaa
acatcctcttccatttcaatccaagacctgaggaaaatgtggtggtccgaagcacgagca
tcggaggagtctggcaggctgctgatcgtgacggagggtacccattcgcaacgggagttc
gattcaacttaaccatcgtcaacgaggcggctggccttcagatgtacgtgaatcggaact
ttttcggggcgtaccggcatcgcacggaaaatccattcagagcctacgtttctgtgtcag
ctagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCAAAGGATTCCCCTCTGGATC 684 675 1115 Antisense
CTACGCCCGTCCAAAGACTGGGCCA 157 225 1167 Antisense
CAATCAAAACATCCTCTTCCATTTC 349 181 1227 Antisense
TGTGGTGGTCCGAAGCACGAGCATC 151 555 1272 Antisense
GCACGAGCATCGGAGGAGTCTGGCA 702 315 1286 Antisense
GAGTCTGGCAGGCTGCTGATCGTGA 655 399 1301 Antisense
GTGACGGAGGGTACCCATTCGCAAC 357 477 1322 Antisense
TAACCATCGTCAACGAGGCGGCTGG 455 637 1364 Antisense
GCGTACCGGCATCGCACGGAAAATC 321 291 1423 Antisense
GAAAATCCATTCAGAGCCTACGTTT 145 353 1441 Antisense
GCCTACGTTTCTGTGTCAGCTAGCG 112 283 1456 Antisense
Sequence Source Affymetrix Proprietary Database