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[192911_at] bacterial regulatory protein UHPC like

Description T11G6.4 /REP_DB=WormBase Gene ID /WP=CE06430 /TR=Q22406 /GB=CAA93414.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=bacterial regulatory protein UHPC like
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 62      6grp_total > 61      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 388.2
(-3)
P 		446.8
(-0.3)
P 		517.8
(3)
P 		438.6
(-0.7)
P 		130
B 404.9
(-1.2)
P 		560.2
(3)
P 		501.9
(1.4)
P 		340.8
(-3)
P 		219
C 449.9
(-0.2)
P 		497.8
(1.2)
P 		562.2
(3)
P 		351.3
(-3)
P 		211
avr 414.3
(-1.5) 		501.6
(2) 		527.3
(3) 		376.9
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 420.2
(-2.5)
P 		612.7
(1.5)
P 		626.7
(1.8)
P 		685.5
(3)
P 		489.5
(-1.1)
P 		398.4
(-3)
P 		287
B 552.4
(1.6)
P 		524.9
(0.6)
P 		527.1
(0.7)
P 		589.1
(3)
P 		542.1
(1.2)
P 		429.1
(-3)
P 		160
C 534.4
(0.7)
P 		540.1
(0.9)
P 		619.5
(3)
P 		599.5
(2.5)
P 		443.3
(-1.7)
P 		394.1
(-3)
P 		225
avr 502.3
(-0.4) 		559.2
(1.2) 		591.1
(2.1) 		624.7
(3) 		491.6
(-0.7) 		407.2
(-3) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 141.3
(3)
P 		97
(-0.4)
P 		135.4
(2.5)
P 		64.2
(-3)
P 		77
B 129.1
(2.2)
P 		138.4
(3)
P 		116.3
(1)
P 		72.6
(-3)
P 		66
C 148.9
(0.9)
P 		143.1
(0.7)
P 		195.9
(3)
P 		59.2
(-3)
P 		137
avr 139.8
(2.3) 		126.2
(1.4) 		149.2
(3) 		65.3
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 77.5
(-3)
P 		217.9
(3)
P 		136.5
(-0.5)
P 		173.9
(1.1)
P 		147.7
(-0)
P 		97
(-2.2)
P 		140
B 192.2
(1.2)
P 		174.7
(0)
P 		128
(-3)
P 		156
(-1.2)
P 		220.3
(3)
P 		160
(-0.9)
P 		92
C 198.1
(3)
P 		164.8
(0.4)
P 		157.7
(-0.1)
P 		120.6
(-3)
P 		143.5
(-1.2)
P 		131.9
(-2.1)
P 		78
avr 155.9
(-0.2) 		185.8
(3) 		140.7
(-1.8) 		150.2
(-0.8) 		170.5
(1.4) 		129.6
(-3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9073
Sequence Type Exemplar sequence
Representative Public ID T11G6.4 NCBI
Target Description T11G6.4 /REP_DB=WormBase Gene ID /WP=CE06430 /TR=Q22406 /GB=CAA93414.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=bacterial regulatory protein UHPC like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069609 NCBI Caenorhabditis elegans T11G6.4 (T11G6.4) mRNA, complete cds. 11/11 None
SNAP00000000765 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10849935:10851637:-1 11/11 None
GENEFINDER00000000774 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10849935:10851900:-1 10/11 None
T11G6.4 ENSEMBL cdna:known chromosome:CEL140:IV:10850161:10851904:-1 gene:T11G6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10850371-10851556(-) 100.0 100.0
Public Domain and Genome References
Gene Title bacterial regulatory protein UHPC like
Ensembl T11G6.4
Entrez Gene 188431 Entrez gene
SwissProt Q22406 EMBL-EBI
WormBase CE35616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93414 Hypothetical protein T11G6.4 [Caenorhabditis elegans] ref|NP_502010.2| T11G6.4 [Caenorhabditis elegans] 0.0
blast CAA93417 Hypothetical protein T11G6.2 [Caenorhabditis elegans] ref|NP_502012.2| T11G6.2 [Caenorhabditis elegans] 1.0E-173
blast CAE70837 Hypothetical protein CBG17617 [Caenorhabditis briggsae] 1.0E-170
blast CAA93417 Hypothetical protein T11G6.2 [Caenorhabditis elegans] ref|NP_502012.2| T11G6.2 [Caenorhabditis elegans] 1.0E-158
blast CAE70837 Hypothetical protein CBG17617 [Caenorhabditis briggsae] 1.0E-155
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502010.2 8 77-99,109-126,138-160,170-192,197-219,251-273,329-346,356-378
T11G6.4 8 77-99,109-126,138-160,170-192,197-219,251-273,329-346,356-378
SNAP00000000765 10 39-61,71-88,100-122,132-154,159-181,213-235,290-307,322-344,356-378,388-410
GENEFINDER00000000774 8 77-99,109-126,138-160,170-192,197-219,251-273,357-379,389-411
Sequence
Target Sequence 
>C. ELEGANS:192911_AT
gatagctagtcatgcattgtccctaggatacgagtacccattccttataatctgttcgtt
gcttcttggatacagtatgattgtttactggcagttaccttcagctccttgggatataga
tcacagcttcccacatgattcggaaaataaagaaaaacaagagcttcttccaaacagacc
tccggctttaggatttttcaaaacttggctaattccaggagtgatctccttttctctggc
atttgcctgcctcaaatttgtaaacgacgggtttttcttctggctgccctactatctaca
tgacggtctcaactggccagagacatttgcagatgctttatcgacatggtatgatgtagg
aggaatccttgcatcagtggtagcaggagctgcatctgacagaatgaaatcaagaacctc
attaattttctacatgctcatcgcgtcgtttgtgtcgttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAGCTAGTCATGCATTGTCCCTA 398 423 378 Antisense
GTCCCTAGGATACGAGTACCCATTC 116 471 396 Antisense
GTACCCATTCCTTATAATCTGTTCG 613 457 411 Antisense
ATCTGTTCGTTGCTTCTTGGATACA 681 33 427 Antisense
TTTACTGGCAGTTACCTTCAGCTCC 550 671 461 Antisense
ATATAGATCACAGCTTCCCACATGA 551 19 491 Antisense
AAGAGCTTCTTCCAAACAGACCTCC 429 153 536 Antisense
CAGGAGTGATCTCCTTTTCTCTGGC 140 209 593 Antisense
CTACATGACGGTCTCAACTGGCCAG 433 225 673 Antisense
TAATTTTCTACATGCTCATCGCGTC 282 635 800 Antisense
TCATCGCGTCGTTTGTGTCGTTGTA 511 621 815 Antisense
Sequence Source Affymetrix Proprietary Database