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[192910_s_at] phosphate carrier protein precursor

Description F01G4.6 /REP_DB=WormBase Gene ID /WP=CE09162 /TR=SW:P40614 /GB=CAA92769.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=phosphate carrier protein precursor
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 10      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 18      6grp_total > 03      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8055
1 2 3 4 range
A 17720.1
(-1.3)
P 		15594.8
(-3)
P 		16636.1
(-2.2)
P 		23062.7
(3)
P 		7468
B 17419.9
(-0.2)
P 		15008.1
(-3)
P 		16027.7
(-1.8)
P 		20133.4
(3)
P 		5125
C 16303.1
(-2.2)
P 		15411.3
(-2.9)
P 		15225.3
(-3)
P 		23005.6
(3)
P 		7780
avr 17147.7
(-1.4) 		15338.1
(-3) 		15963
(-2.4) 		22067.2
(3) 		6729

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7861
1 2 3 4 5 6 range
A 19258.3
(3)
P 		17705.6
(1.2)
P 		15997.8
(-0.8)
P 		17447.4
(0.9)
P 		15070.6
(-1.9)
P 		14172.4
(-3)
P 		5086
B 16038.4
(2.7)
P 		16264.6
(3)
P 		12658.8
(-1.4)
P 		15326
(1.8)
P 		13784.8
(-0.1)
P 		11397.8
(-3)
P 		4867
C 17444.6
(2.2)
P 		15686.7
(0.6)
P 		18346.2
(3)
P 		16911.7
(1.7)
P 		16194.7
(1.1)
P 		11558.5
(-3)
P 		6788
avr 17580.4
(3) 		16552.3
(1.8) 		15667.6
(0.8) 		16561.7
(1.8) 		15016.7
(0) 		12376.2
(-3) 		5204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3076
1 2 3 4 range
A 6451.9
(3)
P 		3385.2
(-3)
P 		4349
(-1.1)
P 		3375.9
(-3)
P 		3076
B 5555.1
(3)
P 		3706.7
(-3)
P 		3714
(-3)
P 		4290.4
(-1.1)
P 		1848
C 5396.8
(3)
P 		4430.8
(-0.8)
P 		5306.5
(2.6)
P 		3879.1
(-3)
P 		1518
avr 5801.3
(3) 		3840.9
(-3) 		4456.5
(-1.1) 		3848.5
(-3) 		1960

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3392
1 2 3 4 5 6 range
A 3550.1
(-2.8)
P 		6297
(3)
P 		3484
(-2.9)
P 		4425.1
(-0.9)
P 		4547.7
(-0.7)
P 		3450.5
(-3)
P 		2847
B 5580.6
(3)
P 		5413.8
(2.6)
P 		3073.9
(-3)
P 		4059.3
(-0.7)
P 		5600.6
(3)
P 		4250.2
(-0.2)
P 		2527
C 6466
(3)
P 		4786.5
(-0.3)
P 		4669.4
(-0.5)
P 		3401
(-3)
P 		5240.4
(0.6)
P 		3869.3
(-2.1)
P 		3065
avr 5198.9
(2) 		5499.1
(3) 		3742.4
(-3) 		3961.8
(-2.3) 		5129.6
(1.7) 		3856.7
(-2.6) 		1757
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192910_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8524
Sequence Type Exemplar sequence
Representative Public ID F01G4.6 NCBI
Target Description F01G4.6 /REP_DB=WormBase Gene ID /WP=CE09162 /TR=SW:P40614 /GB=CAA92769.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=phosphate carrier protein precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069686 NCBI Caenorhabditis elegans F01G4.6 (F01G4.6) mRNA, complete cds. 11/11 A 
F01G4.6.7 ENSEMBL cdna:known chromosome:CEL140:IV:11146912:11149476:-1 gene:F01G4.6 11/11 None
F01G4.6.5 ENSEMBL cdna:known chromosome:CEL140:IV:11147230:11149504:-1 gene:F01G4.6 11/11 A 
F01G4.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:11147230:11149476:-1 gene:F01G4.6 11/11 A 
F01G4.6.3 ENSEMBL cdna:known chromosome:CEL140:IV:11147230:11149478:-1 gene:F01G4.6 11/11 None
F01G4.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:11147230:11149478:-1 gene:F01G4.6 11/11 A 
F01G4.6.8 ENSEMBL cdna:known chromosome:CEL140:IV:11147237:11149476:-1 gene:F01G4.6 11/11 None
F01G4.6.6 ENSEMBL cdna:known chromosome:CEL140:IV:11147242:11149476:-1 gene:F01G4.6 11/11 A 
F01G4.6.4 ENSEMBL cdna:known chromosome:CEL140:IV:11147242:11149476:-1 gene:F01G4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11147639-11149473(-) 100.0 100.0
Public Domain and Genome References
Gene Title phosphate carrier protein precursor
Ensembl F01G4.6
Entrez Gene 178020 Entrez gene
SwissProt P40614 EMBL-EBI
WormBase CE09162 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252334_AT mitochondrial phosphate transporter, putative at
DROSOPHILA_2:1637525_S_AT Mitochondrial phosphate carrier protein dm
DROSGENOME1:144140_AT Mitochondrial phosphate carrier protein dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97430 Hypothetical protein F01G4.6 [Caenorhabditis elegans] emb|CAA92769.1| Hypothetical protein F01G4.6 [Caenorhabditis elegans] ref|NP_502087.1| F01G4.6 [Caenorhabditis elegans] sp|P40614|MPCP_CAEEL Phosphate carrier protein, mitochondrial precursor (PTP) emb|CAA53719.1| phosphate carrier protein [Caenorhabditis elegans] 0.0
blast CAE62012 Hypothetical protein CBG06020 [Caenorhabditis briggsae] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.6E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.5E-25
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:192910_S_AT
tatctctacagaacctctctttacctcgctgcttccgcctcagctgagttcttcgctgat
atccttctcgccccaatggaagccaccaaggtccgtatccaaacctcaccaggagctcca
ccaactcttcgtggatgtgcaccaatgatctacaaggccgaaggactcaccggattttac
aagggacttccaccactctggatgagacagattccatacaccatgatgaagttcgcttgc
ttcgagaagaccgttgaggccctttaccaatacgttgttccaaagccaagagcagagtgc
tccaaggctgaacaacttgtcgtcacgtttgttgctggatatatcgccggagttttctgc
gccatcgtatctcacccagccgacactgttgtttccaagcttaaccaagactctcaagcc
accgccggaggaatcctcaagaaacttggtttcgccggagtctggaagggacttgtgcca
cgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTCTACAGAACCTCTCTTTACC 564 659 418 Antisense
AGCTGAGTTCTTCGCTGATATCCTT 528 81 459 Antisense
TGGAAGCCACCAAGGTCCGTATCCA 267 547 494 Antisense
CAAGGCCGAAGGACTCACCGGATTT 326 179 570 Antisense
GACTTCCACCACTCTGGATGAGACA 642 371 602 Antisense
GCTTCGAGAAGACCGTTGAGGCCCT 99 307 656 Antisense
TGAGGCCCTTTACCAATACGTTGTT 534 565 672 Antisense
TTGTCGTCACGTTTGTTGCTGGATA 496 703 734 Antisense
TATATCGCCGGAGTTTTCTGCGCCA 638 659 757 Antisense
CAGCCGACACTGTTGTTTCCAAGCT 16 201 794 Antisense
GTCTGGAAGGGACTTGTGCCACGTA 215 471 877 Antisense
Sequence Source Affymetrix Proprietary Database