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[192909_at]

Description D2030.2 /REP_DB=WormBase Gene ID /WP=CE09079 /TR=P90788 /GB=CAA98115.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ATP-dependent CLP protease (CLPX) like
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 15      4grp_high_8_8 > 21      6grp_highest_nonorm > 79      6grp_total > 85      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1107
1 2 3 4 range
A 1197.4
(-2.8)
P 		1417.6
(-1.6)
P 		1163
(-3)
P 		2230.7
(3)
P 		1068
B 1218.8
(-2.5)
P 		1365.9
(-1.6)
P 		1139
(-3)
P 		2098.2
(3)
P 		959
C 1123.9
(-3)
P 		1319.9
(-1.9)
P 		1305.2
(-2)
P 		2190.8
(3)
P 		1067
avr 1180
(-3) 		1367.8
(-1.9) 		1202.4
(-2.9) 		2173.2
(3) 		993

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1228
1 2 3 4 5 6 range
A 1089.4
(-2.7)
P 		1035.4
(-3)
P 		1257.8
(-1.9)
P 		1802
(0.9)
P 		1950.9
(1.7)
P 		2213.8
(3)
P 		1178
B 1090.8
(-3)
P 		1116
(-2.9)
P 		1350.5
(-1.7)
P 		1953.8
(1.5)
P 		1886.7
(1.1)
P 		2250.1
(3)
P 		1159
C 1059
(-2.8)
P 		1022.4
(-3)
P 		1392.2
(-1.2)
P 		2240.6
(3)
P 		1851.4
(1.1)
P 		2173.2
(2.7)
P 		1218
avr 1079.7
(-2.9) 		1057.9
(-3) 		1333.5
(-1.6) 		1998.8
(1.9) 		1896.3
(1.4) 		2212.4
(3) 		1155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 436
(3)
P 		307.7
(-2.8)
P 		304
(-3)
P 		326.5
(-2)
P 		132
B 388.7
(1.1)
P 		337.3
(-0.6)
P 		263.9
(-3)
P 		447.1
(3)
P 		183
C 372
(-2.8)
P 		379.5
(-2.3)
P 		454.9
(3)
P 		369.4
(-3)
P 		86
avr 398.9
(3) 		341.5
(-2.9) 		340.9
(-3) 		381
(1.1) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 638
1 2 3 4 5 6 range
A 200.8
(-3)
P 		368.2
(-0.4)
P 		273.9
(-1.9)
P 		457
(1)
P 		588.7
(3)
P 		539
(2.2)
P 		388
B 379.5
(-2.4)
P 		371.5
(-2.5)
P 		327.9
(-3)
P 		517.5
(-0.8)
P 		766.5
(2.1)
P 		839
(3)
P 		511
C 392.5
(-1.8)
P 		312
(-3)
P 		354.3
(-2.4)
P 		450.6
(-1)
P 		599.1
(1.1)
P 		727.5
(3)
P 		416
avr 324.3
(-2.9) 		350.6
(-2.5) 		318.7
(-3) 		475
(-0.6) 		651.4
(2.2) 		701.8
(3) 		383
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2423
Sequence Type Exemplar sequence
Representative Public ID D2030.2 NCBI
Target Description D2030.2 /REP_DB=WormBase Gene ID /WP=CE09079 /TR=P90788 /GB=CAA98115.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ATP-dependent CLP protease (CLPX) like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025905(11), NM_001025906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025905 NCBI Caenorhabditis elegans D2030.2a (D2030.2) mRNA, complete cds. 11/11 None
NM_001025906 NCBI Caenorhabditis elegans D2030.2b (D2030.2) mRNA, complete cds. 11/11 None
GENEFINDER00000031288 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7582406:7586465:1 11/11 None
SNAP00000031271 ENSEMBL cdna:SNAP chromosome:CEL140:I:7584782:7586465:1 11/11 None
D2030.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:7582322:7586690:1 gene:D2030.2 11/11 None
D2030.2a.4 ENSEMBL cdna:known chromosome:CEL140:I:7582327:7586828:1 gene:D2030.2 11/11 None
D2030.2a.3 ENSEMBL cdna:known chromosome:CEL140:I:7582367:7586690:1 gene:D2030.2 11/11 None
D2030.2b.1 ENSEMBL cdna:known chromosome:CEL140:I:7582403:7586465:1 gene:D2030.2 11/11 None
D2030.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:7582403:7586690:1 gene:D2030.2 11/11 None
D2030.2b.2 ENSEMBL cdna:known chromosome:CEL140:I:7584077:7586465:1 gene:D2030.2 11/11 None
D2030.2b.4 ENSEMBL cdna:known chromosome:CEL140:I:7584078:7586465:1 gene:D2030.2 11/11 None
D2030.2b.3 ENSEMBL cdna:known chromosome:CEL140:I:7584083:7586465:1 gene:D2030.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7582336-7586396(+) 100.0 100.0
Public Domain and Genome References
Ensembl D2030.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98115 Hypothetical protein D2030.2a [Caenorhabditis elegans] ref|NP_001021076.1| D2030.2a [Caenorhabditis elegans] 0.0
blast CAE66568 Hypothetical protein CBG11883 [Caenorhabditis briggsae] 0.0
blast CAE45047 Hypothetical protein D2030.2b [Caenorhabditis elegans] ref|NP_001021077.1| D2030.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 9.2E-25
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 9.2E-25
Sequence
Target Sequence 
>C. ELEGANS:192909_AT
gcttctggagccttcagtaatctcgataaaattgttggaaggcgattggataagaaggca
ttaggatttggtacgtcttctggaaatgtcagaatctctggagatgattcaaattccgag
gtgatgagaaaacgagatgagcttttatcaaaagcagatcaaggagatttgattagtttt
ggaatggtgccagaattagttggaagattccctgttcttgtgcccttccattcatttgat
aaacagatgcttgtccgtgtaatgacagagccacaaaactcccttcttgcacaactgaaa
ttgcaattcggaattgacaacgtagatctctcattctctgctgaagctctcgaacaagtc
gctcaactggctctcgacagaaagacgggagcacgtgctcttcggtcaattcttgaagcc
gctctgttagaagcgaagttcaccgttcccggatctgacatcgaatctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCTGGAGCCTTCAGTAATCTCG 423 303 1189 Antisense
TTGGAAGATTCCCTGTTCTTGTGCC 114 709 1388 Antisense
ATGACAGAGCCACAAAACTCCCTTC 606 43 1450 Antisense
AACTCCCTTCTTGCACAACTGAAAT 544 141 1465 Antisense
ACAACGTAGATCTCTCATTCTCTGC 452 113 1505 Antisense
CATTCTCTGCTGAAGCTCTCGAACA 155 217 1520 Antisense
CTCGAACAAGTCGCTCAACTGGCTC 99 233 1537 Antisense
AAGACGGGAGCACGTGCTCTTCGGT 130 153 1570 Antisense
GTCAATTCTTGAAGCCGCTCTGTTA 619 463 1593 Antisense
TTAGAAGCGAAGTTCACCGTTCCCG 677 667 1615 Antisense
TTCCCGGATCTGACATCGAATCTGT 214 699 1634 Antisense
Sequence Source Affymetrix Proprietary Database