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[192908_s_at] Src homology domain 3 ; Ank repeat

Description Y106G6H.14 /REP_DB=WormBase Gene ID /WP=CE24111 /TR=Q9U2Z5 /GB=CAA21577.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Src homology domain 3 ; Ank repeat
Cluster 6grp_high1_10_10 > 44      4grp_high_8_8 > 59      6grp_total > 65      4grp_total > 60      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 454.1
(3)
P 		400.3
(-0.1)
A 		439.8
(2.2)
P 		351.1
(-3)
A 		103
B 397.6
(1.2)
P 		393.5
(1)
P 		454
(3)
P 		268.2
(-3)
M 		186
C 387.1
(3)
P 		345
(-3)
A 		387.4
(3)
P 		348
(-2.6)
P 		42
avr 412.9
(2.2) 		379.6
(0.3) 		427.1
(3) 		322.4
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 512.3
(3)
M 		453.7
(-1.8)
P 		462.1
(-1.1)
P 		439.3
(-3)
P 		485.6
(0.8)
P 		467
(-0.7)
P 		73
B 444
(-2.5)
P 		528.9
(0.9)
P 		435
(-2.9)
P 		582.5
(3)
P 		431.5
(-3)
P 		448.7
(-2.3)
P 		151
C 419.6
(-1)
P 		511.7
(1.3)
P 		453
(-0.2)
P 		510.1
(1.2)
P 		340.2
(-3)
P 		581.4
(3)
P 		241
avr 458.6
(-0.4) 		498.1
(2.2) 		450
(-1) 		510.6
(3) 		419.1
(-3) 		499
(2.2) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 165.3
(3)
P 		86.9
(-1.1)
A 		115
(0.4)
P 		51.4
(-3)
A 		114
B 126.8
(3)
P 		97.2
(0.5)
P 		105.2
(1.1)
P 		57.1
(-3)
M 		70
C 128.1
(2.5)
P 		99.2
(0.2)
A 		135
(3)
P 		58.7
(-3)
P 		76
avr 140.1
(3) 		94.4
(-0.2) 		118.4
(1.5) 		55.7
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 94.4
(-3)
M 		161.4
(3)
P 		100.6
(-2.4)
P 		111.4
(-1.5)
P 		146.5
(1.7)
P 		113.7
(-1.3)
P 		67
B 154.5
(1.2)
P 		176
(3)
P 		105.6
(-3)
P 		154.3
(1.2)
P 		175.3
(2.9)
P 		167.3
(2.3)
P 		70
C 155.5
(0.5)
P 		156.1
(0.5)
P 		115.3
(-2.2)
P 		102.6
(-3)
P 		110.1
(-2.5)
P 		194.6
(3)
P 		92
avr 134.8
(-0.1) 		164.5
(3) 		107.2
(-3) 		122.8
(-1.4) 		144
(0.9) 		158.5
(2.4) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192908_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2029
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.14 NCBI
Target Description Y106G6H.14 /REP_DB=WormBase Gene ID /WP=CE24111 /TR=Q9U2Z5 /GB=CAA21577.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Src homology domain 3 ; Ank repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060337 NCBI Caenorhabditis elegans Y106G6H.14 (Y106G6H.14) mRNA, complete cds. 11/11 None
SNAP00000001711 ENSEMBL cdna:SNAP chromosome:CEL140:I:10480429:10481511:-1 11/11 None
GENEFINDER00000001716 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10480429:10481511:-1 11/11 None
Y106G6H.14 ENSEMBL cdna:known chromosome:CEL140:I:10480345:10481512:-1 gene:Y106G6H.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10480359-10481442(-) 100.0 100.0
Public Domain and Genome References
Gene Title Src homology domain 3 ; Ank repeat
Ensembl Y106G6H.14
Entrez Gene 172926 Entrez gene
SwissProt Q9U2Z5 EMBL-EBI
WormBase CE24111 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19055.1.S1_AT similar to Osteoclast stimulating factor 1 cfa
CANINE_2:CFA.19055.1.S1_S_AT similar to Osteoclast stimulating factor 1 cfa
CANINE_2:CFAAFFX.3446.1.S1_S_AT similar to Osteoclast stimulating factor 1 cfa
CHICKEN:GGAAFFX.12538.1.S1_AT osteoclast stimulating factor 1 gga
HG-U95AV2:467_AT osteoclast stimulating factor 1 hs
HC-G110:467_AT osteoclast stimulating factor 1 hs
HG-U133_PLUS_2:204479_AT osteoclast stimulating factor 1 hs
HG-U133A:204479_AT osteoclast stimulating factor 1 hs
HG-FOCUS:204479_AT osteoclast stimulating factor 1 hs
HG-U133A_2:204479_AT osteoclast stimulating factor 1 hs
HU35KSUBC:RC_AA149226_AT osteoclast stimulating factor 1 hs
HUGENEFL:U63717_AT osteoclast stimulating factor 1 hs
U133_X3P:G6912563_3P_AT osteoclast stimulating factor 1 hs
HG-U95C:63026_AT osteoclast stimulating factor 1 hs
HU35KSUBC:RC_N64491_AT Osteoclast stimulating factor 1 hs
U133_X3P:HS2.282077.1.A1_3P_S_AT Osteoclast stimulating factor 1 hs
HG-U133_PLUS_2:1559201_A_AT Osteoclast stimulating factor 1 hs
HG-U95B:45057_AT Osteoclast stimulating factor 1 hs
HG-U95B:45013_AT Osteoclast stimulating factor 1 hs
HG-U95E:90899_AT Osteoclast stimulating factor 1 hs
HU35KSUBC:RC_N50056_AT Osteoclast stimulating factor 1 hs
MU11KSUBA:U58888_S_AT osteoclast stimulating factor 1 mm
MG-U74AV2:99158_AT osteoclast stimulating factor 1 mm
MOE430A:1452246_AT osteoclast stimulating factor 1 mm
MOUSE430A_2:1452246_AT osteoclast stimulating factor 1 mm
MOUSE430_2:1452246_AT osteoclast stimulating factor 1 mm
MOUSE430_2:1446023_AT Osteoclast stimulating factor 1 (Ostf1), mRNA mm
MOE430B:1446023_AT Osteoclast stimulating factor 1 (Ostf1), mRNA mm
MU19KSUBA:TC20894_AT Osteoclast stimulating factor 1 (Ostf1), mRNA mm
MU19KSUBB:TC27384_AT Osteoclast stimulating factor 1 (Ostf1), mRNA mm
RG-U34C:RC_AI176368_AT osteoclast stimulating factor 1 rn
RAE230A:1372246_AT osteoclast stimulating factor 1 rn
RAT230_2:1372246_AT osteoclast stimulating factor 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA21577 Hypothetical protein Y106G6H.14 [Caenorhabditis elegans] ref|NP_492738.1| Y106G6H.14 [Caenorhabditis elegans] 1.0E-106
blast CAA21577 Hypothetical protein Y106G6H.14 [Caenorhabditis elegans] ref|NP_492738.1| Y106G6H.14 [Caenorhabditis elegans] 1.0E-103
blast CAE58949 Hypothetical protein CBG02217 [Caenorhabditis briggsae] 3.0E-94
blast CAE58949 Hypothetical protein CBG02217 [Caenorhabditis briggsae] 4.0E-91
blast AAM82161 osteoclast stimulating factor [Sus scrofa] ref|NP_999170.1| osteoclast stimulating factor [Sus scrofa] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.0011
Pfam IPR002110 EMBL-EBI Ankyrin 0.0020
Pfam IPR002110 EMBL-EBI Ankyrin 1.8E-8
Pfam IPR001452 EMBL-EBI SH3 9.8E-18
Pfam IPR002110 EMBL-EBI Ankyrin 0.0011
Pfam IPR002110 EMBL-EBI Ankyrin 0.0020
Pfam IPR002110 EMBL-EBI Ankyrin 1.8E-8
Pfam IPR001452 EMBL-EBI SH3 1.2E-18
Sequence
Target Sequence 
>C. ELEGANS:192908_S_AT
gtcagcgacgagcagccgaacaaagattggttccaagcaagcatcggaggcaaaaaagga
ttggttccagctaattatgtgatcagtgagaatgtggaagagctcccgaatcccctacat
gaagctgctcgacgtggaaatatggatatgctggctgaatgtcttcgagagcgggtatcc
gtcaactccctcgataagtccggagctacaccactttactgggcttcacatggtggacac
gcgccagcagtggatacgttgttgaaggatccaaaagttgcagtttcggttcagaacaaa
ctcggtgatacgcctcttcatgcagcggcctacaaaggccacgtggaatgtgtgagactt
cttctcgcttcgtcagccaatccatttgtaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGCGACGAGCAGCCGAACAAAG 532 465 148 Antisense
GAATGTGGAAGAGCTCCCGAATCCC 656 329 237 Antisense
CCCCTACATGAAGCTGCTCGACGTG 581 261 259 Antisense
GGATATGCTGGCTGAATGTCTTCGA 515 509 291 Antisense
TCGAGAGCGGGTATCCGTCAACTCC 471 601 312 Antisense
GTCAACTCCCTCGATAAGTCCGGAG 265 463 328 Antisense
CTACACCACTTTACTGGGCTTCACA 59 227 353 Antisense
ACACGCGCCAGCAGTGGATACGTTG 445 109 384 Antisense
GAACAAACTCGGTGATACGCCTCTT 592 351 441 Antisense
AATGTGTGAGACTTCTTCTCGCTTC 664 163 494 Antisense
CTTCGTCAGCCAATCCATTTGTAAG 76 221 515 Antisense
Sequence Source Affymetrix Proprietary Database