[Home] | [Total List]

[192907_at] glucose inhibited division protein

Description F52H3.2 /REP_DB=WormBase Gene ID /WP=CE03398 /TR=SW:Q20680 /GB=CAA91322.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glucose inhibited division protein
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 81      6grp_total > 77      4grp_total > 62      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 241.9
(3)
P 		218.1
(1.8)
P 		209.9
(1.4)
P 		123.3
(-3)
P 		119
B 342.3
(3)
P 		192.9
(-0.5)
P 		237
(0.5)
P 		85.2
(-3)
P 		257
C 303.8
(3)
P 		200.8
(-0.6)
P 		248.7
(1.1)
P 		131.4
(-3)
P 		172
avr 296
(3) 		203.9
(-0) 		231.9
(0.9) 		113.3
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 187.9
(-3)
P 		254.9
(-0.3)
P 		263.4
(0)
P 		236.3
(-1.1)
P 		239.2
(-0.9)
P 		337.1
(3)
P 		149
B 224.6
(-2.5)
P 		259.7
(-0.6)
P 		261.9
(-0.4)
P 		215.4
(-3)
P 		289.4
(1.1)
P 		324
(3)
P 		109
C 208.7
(-3)
P 		270.5
(-1.4)
P 		236.8
(-2.3)
P 		214.1
(-2.9)
P 		260.8
(-1.6)
P 		440.2
(3)
P 		232
avr 207.1
(-3) 		261.7
(-1) 		254
(-1.2) 		221.9
(-2.4) 		263.1
(-0.9) 		367.1
(3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 88.1
(3)
P 		47.3
(-0.5)
P 		54.9
(0.2)
P 		18
(-3)
P 		70
B 109.2
(3)
P 		47.6
(-1.1)
P 		54.9
(-0.6)
P 		18.2
(-3)
P 		91
C 100.6
(3)
P 		57.7
(-0.3)
P 		86.7
(1.9)
P 		22.2
(-3)
P 		78
avr 99.3
(3) 		50.9
(-0.6) 		65.5
(0.5) 		19.5
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 34.6
(-3)
P 		90.7
(3)
P 		57.4
(-0.6)
P 		59.9
(-0.3)
P 		72.2
(1)
P 		82.1
(2.1)
P 		56
B 78.1
(-1)
P 		86.5
(-0.2)
P 		63.6
(-2.4)
P 		57
(-3)
P 		117.6
(2.7)
P 		120.8
(3)
P 		64
C 77.4
(-1)
P 		82.6
(-0.7)
P 		60.3
(-2)
P 		43.1
(-3)
P 		84.4
(-0.6)
P 		147.4
(3)
P 		104
avr 63.4
(-2) 		86.6
(0.1) 		60.4
(-2.3) 		53.3
(-3) 		91.4
(0.6) 		116.8
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2658
Sequence Type Exemplar sequence
Representative Public ID F52H3.2 NCBI
Target Description F52H3.2 /REP_DB=WormBase Gene ID /WP=CE03398 /TR=SW:Q20680 /GB=CAA91322.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glucose inhibited division protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063768 NCBI Caenorhabditis elegans F52H3.2 (F52H3.2) mRNA, complete cds. 11/11 None
SNAP00000021625 ENSEMBL cdna:SNAP chromosome:CEL140:II:10030935:10033119:-1 11/11 None
GENEFINDER00000021632 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10030935:10033119:-1 11/11 None
F52H3.2 ENSEMBL cdna:known chromosome:CEL140:II:10030807:10033124:-1 gene:F52H3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10030931-10033116(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucose inhibited division protein
Ensembl F52H3.2
Entrez Gene 174563 Entrez gene
SwissProt Q20680 EMBL-EBI
WormBase CE03398 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263053_AT glucose-inhibited division family A protein at
CANINE:1604659_AT similar to mitochondrial translation optimization 1 homolog isoform IV cfa
CANINE_2:CFAAFFX.4845.1.S1_AT similar to mitochondrial translation optimization 1 homolog isoform IV cfa
DROSOPHILA_2:1628596_AT dm
DROSGENOME1:147680_AT dm
HG-U133_PLUS_2:233665_X_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133B:233665_X_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:224430_S_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133B:224430_S_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:218716_X_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133A:218716_X_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133A_2:218716_X_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U95B:44624_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HU35KSUBA:RC_AA278853_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
U133_X3P:HS.326655.0.A1_3P_S_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133A_2:222014_X_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:222014_X_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
HG-U133A:222014_X_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) hs
MG-U74BV2:106252_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) mm
MG-U74CV2:170469_R_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) mm
MOE430A:1431739_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) mm
MOUSE430A_2:1431739_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) mm
MOUSE430_2:1431739_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) mm
MOE430A:1416991_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) mm
MOUSE430A_2:1416991_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) mm
MOUSE430_2:1416991_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) mm
MU19KSUBA:TC16513_AT Mitochondrial translation optimization 1 homolog (S. cerevisiae) (Mto1), mRNA mm
MU19KSUBA:TC24269_AT Mitochondrial translation optimization 1 homolog (S. cerevisiae) (Mto1), mRNA mm
MU19KSUBB:TC32800_AT Mitochondrial translation optimization 1 homolog (S. cerevisiae) (Mto1), mRNA mm
RG-U34C:RC_AI144587_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) (predicted) rn
RAE230A:1377493_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1377493_AT mitochondrial translation optimization 1 homolog (S. cerevisiae) (predicted) rn
YEAST_2:1776151_AT Mitochondrial protein, forms a heterodimer complex with Mss1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; required for respiration in paromomycin-resistant 15S rRNA mutants Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15036 disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91322 Hypothetical protein F52H3.2 [Caenorhabditis elegans] ref|NP_496169.1| F52H3.2 [Caenorhabditis elegans] sp|Q20680|YT32_CAEEL Hypothetical protein F52H3.2 in chromosome II 0.0
blast CAE67798 Hypothetical protein CBG13376 [Caenorhabditis briggsae] 0.0
blast XP_532202 PREDICTED: similar to mitochondrial translation optimization 1 homolog isoform IV [Canis familiaris] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR002218 EMBL-EBI Glucose-inhibited division protein A 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192907_AT
gttaacttctcgtgcggagtttcgactttatctacgacccgataatgctgatattcgact
cactgagttgggaagacgtcacaatgcgatcagtgacaaccgatgggcgatattcactga
aactaagggcgaactcaataatctgactcaacgaacagaggaaatgaaaatgagtatggt
gaaatggaaacgaataattccaaaattggctgcgacatccagaaatgacggaaaagttct
atctgcattcgatctgatacatcggtatgatctagacaaaagtgacttggagctttgtct
gaaagataaaaacatcggagaagatattctggaaaggctgaaaattgaaggaagatatca
aatggaacatgagaggatgaaggcaaagaaacaagaaatcgatcgagaatcggctacggc
aattccggacaacactgatttttcaacaatgcgaggcatgagtttggaatgcatcgagaa
gttggaaagagcacgaccaagaaatctggcagcagctacgagaatatctggaattacacc
tgaagccattgttgtactta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAACTTCTCGTGCGGAGTTTCGA 301 445 1323 Antisense
GAGTTTCGACTTTATCTACGACCCG 431 397 1339 Antisense
ATGCTGATATTCGACTCACTGAGTT 686 41 1367 Antisense
GGGAAGACGTCACAATGCGATCAGT 184 493 1392 Antisense
GACAACCGATGGGCGATATTCACTG 83 365 1417 Antisense
GGCGAACTCAATAATCTGACTCAAC 555 541 1450 Antisense
AAGTTCTATCTGCATTCGATCTGAT 190 157 1556 Antisense
AATCGGCTACGGCAATTCCGGACAA 235 151 1730 Antisense
TTCCGGACAACACTGATTTTTCAAC 451 697 1745 Antisense
GAAATCTGGCAGCAGCTACGAGAAT 190 363 1823 Antisense
ACACCTGAAGCCATTGTTGTACTTA 90 109 1858 Antisense
Sequence Source Affymetrix Proprietary Database