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[192904_at]

Description R07B5.8 /REP_DB=WormBase Gene ID /WP=CE06262 /TR=Q21789 /GB=CAA96668.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=MONOCYTIC LEUKEMIA ZINC FINGER PROTEIN
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 16      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 512
1 2 3 4 range
A 729.8
(3)
P 		395.7
(-0.9)
P 		218.3
(-3)
P 		335.3
(-1.6)
P 		512
B 638.5
(3)
P 		308.4
(-2.4)
P 		273.9
(-3)
P 		282
(-2.9)
P 		365
C 609.7
(3)
P 		352.4
(-1.6)
P 		271
(-3)
P 		325.5
(-2)
P 		339
avr 659.3
(3) 		352.2
(-1.6) 		254.4
(-3) 		314.3
(-2.1) 		405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 675.5
(3)
P 		600.6
(1.9)
P 		310.5
(-2.4)
P 		272
(-3)
P 		375.7
(-1.5)
P 		375.4
(-1.5)
P 		404
B 644.8
(3)
P 		572.4
(1.7)
P 		349
(-2.5)
P 		347.9
(-2.5)
P 		359.2
(-2.3)
P 		322
(-3)
P 		323
C 604.4
(3)
P 		510.6
(1)
P 		353.9
(-2.2)
P 		402.9
(-1.2)
P 		317.2
(-3)
P 		386.3
(-1.6)
P 		287
avr 641.6
(3) 		561.2
(1.4) 		337.8
(-3) 		340.9
(-2.9) 		350.7
(-2.7) 		361.2
(-2.5) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 265.7
(3)
P 		85.9
(-2)
P 		57.1
(-2.8)
P 		49.1
(-3)
P 		217
B 203.6
(3)
P 		76.2
(-2.3)
P 		63.5
(-2.9)
P 		60.1
(-3)
P 		144
C 201.8
(3)
P 		101.3
(-1.1)
P 		94.5
(-1.4)
P 		54.9
(-3)
P 		147
avr 223.7
(3) 		87.8
(-1.8) 		71.7
(-2.4) 		54.7
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 124.5
(-0.7)
P 		213.6
(3)
P 		67.6
(-3)
P 		69
(-2.9)
P 		113.4
(-1.1)
P 		91.4
(-2)
P 		146
B 224.4
(3)
P 		190.5
(1.5)
P 		84.8
(-3)
P 		92.2
(-2.7)
P 		146
(-0.4)
P 		120.1
(-1.5)
P 		140
C 224
(3)
P 		155.8
(0.1)
P 		90.1
(-2.6)
P 		81
(-3)
P 		102.6
(-2.1)
P 		129.3
(-1)
P 		143
avr 191
(3) 		186.6
(2.8) 		80.8
(-3) 		80.7
(-3) 		120.7
(-0.8) 		113.6
(-1.2) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11792
Sequence Type Exemplar sequence
Representative Public ID R07B5.8 NCBI
Target Description R07B5.8 /REP_DB=WormBase Gene ID /WP=CE06262 /TR=Q21789 /GB=CAA96668.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=MONOCYTIC LEUKEMIA ZINC FINGER PROTEIN
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171517 NCBI Caenorhabditis elegans R07B5.9 (R07B5.9) mRNA, complete cds. 11/11 None
SNAP00000041731 ENSEMBL cdna:SNAP chromosome:CEL140:V:9849180:9856105:-1 11/11 None
GENEFINDER00000041737 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9849180:9856087:-1 11/11 None
R07B5.9 ENSEMBL cdna:known chromosome:CEL140:V:9848733:9851698:-1 gene:R07B5.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9849179-9856666(-) 98.82 100.0
Public Domain and Genome References
Gene Title
Ensembl R07B5.9
Entrez Gene 3565873 Entrez gene
SwissProt Q8MPZ9 EMBL-EBI
WormBase CE31575 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44143 Hypothetical protein R07B5.9 [Caenorhabditis elegans] ref|NP_741603.1| R07B5.9 [Caenorhabditis elegans] 0.0
blast CAH04717 Hypothetical protein R07B5.8b [Caenorhabditis elegans] ref|NP_001024069.1| R07B5.8b [Caenorhabditis elegans] 0.0
blast CAA96668 Hypothetical protein R07B5.8a [Caenorhabditis elegans] ref|NP_001024068.1| R07B5.8a [Caenorhabditis elegans] 0.0
blast CAE72269 Hypothetical protein CBG19389 [Caenorhabditis briggsae] 0.0
blast CAE72269 Hypothetical protein CBG19389 [Caenorhabditis briggsae] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR002717 EMBL-EBI MOZ/SAS-like protein 3.4E-116
Pfam IPR002717 EMBL-EBI MOZ/SAS-like protein 3.4E-116
Sequence
Target Sequence 
>C. ELEGANS:192904_AT
gaaatggttggtggacctgcttcgcttcagcatactcctcagcaatatgagatgggacat
tcaatggctcagatgtctcaggagagtgcaatcggaggaatcaatactgtgcctagtatt
gagcaacaaaatcagctcatgttacaacatcatcagtttagcagtcctccagctgctcct
cctccatctcaacaacaacaagttgttcagcctccaattccacctgcacctaccaccgcc
aatggccgaagaaggtccgaatcggctgctacacaacggactaaggcgagacaacagcat
caacatcagcaacaacaaccgcagcaaccacaacagagaatagcagctcctggtgtacct
caaggagttcatccacagatgcaattcccaatgaacgcaatgaatatgatgccagcatat
ccaccgttctatccatacaccaactatcctaatatttggcagcccccgtatcagaattat
ccatacaaccaagtggactatcagcagccatggttgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGGTTGGTGGACCTGCTTCGC 638 361 3214 Antisense
ACATCATCAGTTTAGCAGTCCTCCA 659 105 3360 Antisense
CAACAAGTTGTTCAGCCTCCAATTC 34 191 3409 Antisense
GAAGGTCCGAATCGGCTGCTACACA 673 333 3464 Antisense
AGAATAGCAGCTCCTGGTGTACCTC 357 73 3550 Antisense
GGTGTACCTCAAGGAGTTCATCCAC 585 499 3565 Antisense
TATGATGCCAGCATATCCACCGTTC 52 657 3618 Antisense
TCTATCCATACACCAACTATCCTAA 491 613 3641 Antisense
ACTATCCTAATATTTGGCAGCCCCC 10 103 3656 Antisense
AGCCCCCGTATCAGAATTATCCATA 263 83 3674 Antisense
GGACTATCAGCAGCCATGGTTGTAT 286 525 3708 Antisense
Sequence Source Affymetrix Proprietary Database