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[192901_s_at] Zinc finger, C3HC4 type (RING finger)

Description C18B12.4 /REP_DB=WormBase Gene ID /WP=CE18510 /TR=Q9XX98 /GB=CAA20925.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 75      6grp_total > 95      4grp_total > 09      6grp_high1_sub > 04      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 679.4
(-2.7)
P 		654.1
(-3)
P 		655
(-3)
P 		1207.9
(3)
P 		554
B 679.5
(-3)
P 		726.3
(-2.4)
P 		826.6
(-1)
P 		1127.8
(3)
P 		448
C 634.6
(-3)
P 		721.7
(-1.9)
P 		669.9
(-2.6)
P 		1127.9
(3)
P 		493
avr 664.5
(-3) 		700.7
(-2.6) 		717.2
(-2.4) 		1154.5
(3) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 1021.7
(2.5)
P 		644.2
(-2.8)
P 		627.5
(-3)
P 		812.1
(-0.4)
P 		1060.8
(3)
P 		937.6
(1.3)
P 		433
B 795.1
(-1)
P 		704.3
(-2.9)
P 		697.4
(-3)
P 		991.6
(3)
P 		969.8
(2.6)
P 		853.2
(0.2)
P 		294
C 810
(0.4)
P 		616.9
(-2.4)
P 		571.3
(-3)
P 		998.2
(3)
P 		865
(1.1)
P 		783.3
(-0)
P 		427
avr 875.6
(1.4) 		655.1
(-2.6) 		632.1
(-3) 		934
(2.4) 		965.2
(3) 		858
(1.1) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 247.4
(3)
P 		142
(-3)
P 		171.2
(-1.3)
P 		176.8
(-1)
P 		105
B 216.7
(0.7)
P 		179.4
(-3)
P 		191.5
(-1.8)
P 		240.3
(3)
P 		61
C 210.1
(-0.2)
P 		207.5
(-0.6)
P 		233.5
(3)
P 		190.2
(-3)
P 		43
avr 224.7
(3) 		176.3
(-3) 		198.7
(-0.2) 		202.4
(0.2) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 188.4
(-1.3)
P 		229.1
(0)
P 		136.6
(-3)
P 		206
(-0.7)
P 		320.1
(3)
P 		228.3
(-0)
P 		184
B 276.7
(-0.1)
P 		234.4
(-1.3)
P 		169.4
(-3)
P 		262.6
(-0.5)
P 		394
(3)
P 		318.2
(1)
P 		225
C 300.2
(3)
P 		188.2
(-1.3)
P 		145.4
(-3)
P 		200.7
(-0.9)
P 		279.9
(2.2)
P 		262.2
(1.5)
P 		155
avr 255.1
(0.5) 		217.2
(-0.8) 		150.5
(-3) 		223.1
(-0.6) 		331.3
(3) 		269.6
(1) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192901_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17650
Sequence Type Exemplar sequence
Representative Public ID C18B12.4 NCBI
Target Description C18B12.4 /REP_DB=WormBase Gene ID /WP=CE18510 /TR=Q9XX98 /GB=CAA20925.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078097 NCBI Caenorhabditis elegans C18B12.4 (C18B12.4) mRNA, complete cds. 11/11 None
SNAP00000043445 ENSEMBL cdna:SNAP chromosome:CEL140:X:15036943:15040342:-1 11/11 None
GENEFINDER00000043449 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15036943:15040513:-1 11/11 None
C18B12.4 ENSEMBL cdna:known chromosome:CEL140:X:15036613:15040518:-1 gene:C18B12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15036942-15040513(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl C18B12.4
Entrez Gene 181600 Entrez gene
SwissProt Q9XX98 EMBL-EBI
WormBase CE18510 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260168_AT protease-associated zinc finger (C3HC4-type RING finger) family protein at
CANINE:1604334_AT similar to RING finger protein 13 cfa
CANINE:1589011_AT similar to RING finger protein 13 cfa
CANINE_2:CFA.17887.1.S1_S_AT similar to RING finger protein 13 cfa
CANINE_2:CFA.439.1.S1_AT similar to RING finger protein 13 cfa
DROSOPHILA_2:1633069_S_AT dm
DROSGENOME1:154034_AT dm
CHICKEN:GGA.3523.1.S1_AT ring finger protein 13 gga
HG-U133_PLUS_2:201779_S_AT ring finger protein 13 hs
HG-FOCUS:201779_S_AT ring finger protein 13 hs
HG-U133A:201779_S_AT ring finger protein 13 hs
HG-U133A_2:201779_S_AT ring finger protein 13 hs
HG-U133_PLUS_2:201780_S_AT ring finger protein 13 hs
HG-U133A:201780_S_AT ring finger protein 13 hs
HG-U133A_2:201780_S_AT ring finger protein 13 hs
HU35KSUBA:RC_AA449361_AT ring finger protein 13 hs
U133_X3P:G6005863_3P_A_AT ring finger protein 13 hs
U133_X3P:G3387924_3P_A_AT ring finger protein 13 hs
HG-U95AV2:35811_AT ring finger protein 13 hs
HG-U95D:74605_AT ring finger protein 13 hs
HG-U133_PLUS_2:237264_AT Ring finger protein 13 hs
HG-U133B:237264_AT Ring finger protein 13 hs
HG-U133_PLUS_2:239554_AT Ring finger protein 13 hs
HG-U133B:239554_AT Ring finger protein 13 hs
HG-U95B:50857_AT Ring finger protein 13 hs
HG-U95C:61572_AT Ring finger protein 13 hs
HG-U95C:62068_AT Ring finger protein 13 hs
HU35KSUBB:RC_F10418_AT Ring finger protein 13 hs
HU35KSUBC:RC_N59564_AT Ring finger protein 13 hs
U133_X3P:HS.12333.0.A1_3P_AT Ring finger protein 13 hs
U133_X3P:HS.147296.0.A1_3P_AT Ring finger protein 13 hs
Protein Similarities
Method ID Description E-Value
blast CAA20925 Hypothetical protein C18B12.4 [Caenorhabditis elegans] ref|NP_510498.1| C18B12.4 [Caenorhabditis elegans] 0.0
blast CAE63266 Hypothetical protein CBG07640 [Caenorhabditis briggsae] 0.0
blast NP_990686 ring finger protein 13 [Gallus gallus] emb|CAA64725.1| RING zinc finger protein [Gallus gallus] gb|AAX14391.1| RING finger protein 13 [Gallus gallus] sp|Q90972|RNF13_CHICK RING finger protein 13 (C-RZF) prf||2211437A RING finger protein 6.0E-27
blast NP_990686 ring finger protein 13 [Gallus gallus] emb|CAA64725.1| RING zinc finger protein [Gallus gallus] gb|AAX14391.1| RING finger protein 13 [Gallus gallus] sp|Q90972|RNF13_CHICK RING finger protein 13 (C-RZF) prf||2211437A RING finger protein 7.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.1E-12
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.1E-12
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.1E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510498.1 2 7-29,193-215
C18B12.4 2 7-29,193-215
SNAP00000043445 1 160-182
GENEFINDER00000043449 2 12-34,201-223
Sequence
Target Sequence 
>C. ELEGANS:192901_S_AT
aaacttcgacatttgccatgcagacatgttttccactgcaactgcattgatgtgtggctg
acacaaacgcgcaagatctgtcctctgtgcaagaggaaaattggcacggattcggacagc
gaatgctccaccaatgatcttgccagcacttctcaaggccccaatgatgcgacagcgttg
tataataatgcggataatcaatcgggatttgagctgcctgttccacagggacaaatggtc
gatctttggagctcacaggaggctctagtcgatcaggatattgtgcttcacaataccact
cgacgatcaatcaccggatttgttcgcaacgcattccgcaaattgagaaactcgccgaga
cacagagatgtggatgttcattctggacttgagggtggctcatatcttgtgaggcaacaa
acgacatcgaatgacaatgatcatttgttggaaaatgaagtatctgacccaacatctagt
tctgaattaaacattccatcttccgaggagctcacagttccaacatccatttcaactcat
tctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTCGACATTTGCCATGCAGAC 141 129 787 Antisense
ACATGTTTTCCACTGCAACTGCATT 392 107 810 Antisense
GCAAGATCTGTCCTCTGTGCAAGAG 500 321 857 Antisense
ACCAATGATCTTGCCAGCACTTCTC 59 85 916 Antisense
TTCTCAAGGCCCCAATGATGCGACA 181 689 936 Antisense
AATCGGGATTTGAGCTGCCTGTTCC 543 169 986 Antisense
AATGGTCGATCTTTGGAGCTCACAG 258 163 1020 Antisense
TACCACTCGACGATCAATCACCGGA 280 649 1080 Antisense
ACCGGATTTGTTCGCAACGCATTCC 166 87 1099 Antisense
AAACATTCCATCTTCCGAGGAGCTC 47 129 1275 Antisense
AACATCCATTTCAACTCATTCTCTG 567 137 1308 Antisense
Sequence Source Affymetrix Proprietary Database