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[192899_at] Zinc finger, C3HC4 type (RING finger)

Description F54B11.5 /REP_DB=WormBase Gene ID /WP=CE05929 /TR=Q20737 /GB=CAA94134.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 08      6grp_highest_nonorm > 72      6grp_total > 19      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 400.8
(3)
P 		217
(-3)
A 		247.3
(-2)
A 		386.8
(2.5)
P 		184
B 347.3
(-0.8)
P 		254
(-3)
A 		277.8
(-2.4)
A 		505
(3)
P 		251
C 419.2
(3)
P 		196
(-3)
A 		207.2
(-2.7)
A 		338.9
(0.8)
P 		223
avr 389.1
(2.3) 		222.3
(-3) 		244.1
(-2.3) 		410.2
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 489.7
(3)
P 		369.4
(-0.5)
P 		280.6
(-3)
P 		367.7
(-0.5)
P 		417.6
(0.9)
P 		366.6
(-0.5)
P 		209
B 424.5
(1.6)
P 		386.1
(-0.4)
P 		356.6
(-2)
P 		451.2
(3)
P 		416.3
(1.2)
P 		337.6
(-3)
P 		114
C 468.7
(3)
P 		359.9
(-1.1)
P 		356.4
(-1.3)
P 		358.9
(-1.2)
P 		332.3
(-2.2)
P 		310.3
(-3)
P 		158
avr 461
(3) 		371.8
(-1.1) 		331.2
(-3) 		392.6
(-0.2) 		388.7
(-0.3) 		338.2
(-2.7) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 145.9
(3)
P 		47.1
(-3)
A 		64.6
(-1.9)
A 		56.6
(-2.4)
P 		99
B 110.7
(3)
P 		62.7
(-3)
A 		64.4
(-2.8)
A 		107.6
(2.6)
P 		48
C 138.8
(3)
P 		56.4
(-3)
A 		72.2
(-1.8)
A 		57.2
(-2.9)
P 		82
avr 131.8
(3) 		55.4
(-3) 		67.1
(-2.1) 		73.8
(-1.6) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 90.3
(-0.5)
P 		131.4
(3)
P 		61.1
(-3)
P 		93.3
(-0.3)
P 		126
(2.5)
P 		89.3
(-0.6)
P 		70
B 147.7
(1.4)
P 		128.5
(0)
P 		86.6
(-3)
P 		119.5
(-0.6)
P 		169.1
(3)
P 		125.9
(-0.1)
P 		83
C 173.7
(3)
P 		109.8
(-0.8)
P 		90.7
(-1.9)
P 		72.2
(-3)
P 		107.5
(-0.9)
P 		103.9
(-1.1)
P 		102
avr 137.2
(3) 		123.2
(1.5) 		79.5
(-3) 		95
(-1.4) 		134.2
(2.7) 		106.4
(-0.2) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17502
Sequence Type Exemplar sequence
Representative Public ID F54B11.5 NCBI
Target Description F54B11.5 /REP_DB=WormBase Gene ID /WP=CE05929 /TR=Q20737 /GB=CAA94134.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077875 NCBI Caenorhabditis elegans F54B11.5 (F54B11.5) mRNA, complete cds. 11/11 None
SNAP00000008290 ENSEMBL cdna:SNAP chromosome:CEL140:X:13594488:13595986:-1 11/11 None
GENEFINDER00000008302 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13594488:13595986:-1 11/11 None
F54B11.5 ENSEMBL cdna:known chromosome:CEL140:X:13594051:13595986:-1 gene:F54B11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13594487-13595986(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl F54B11.5
Entrez Gene 186213 Entrez gene
SwissProt Q20737 EMBL-EBI
WormBase CE05929 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94134 Hypothetical protein F54B11.5 [Caenorhabditis elegans] ref|NP_510276.1| F54B11.5 [Caenorhabditis elegans] 1.0E-116
blast CAE63114 Hypothetical protein CBG07411 [Caenorhabditis briggsae] 1.0E-102
blast CAG31169 hypothetical protein [Gallus gallus] ref|NP_001007926.1| ring finger protein 141 [Gallus gallus] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.8E-9
Sequence
Target Sequence 
>C. ELEGANS:192899_AT
gacatccacgatttcagtcatgcacatgggatgaatttttggccgatattaaggaaatga
accgaaattatcgcagtcttcttgtcgaaaacgaggagtacttggccttcgctctccgga
acattgactatcagcgtgaaggatatgaaaactggaagtcagagattaaaattctctgct
gcaaggttaatcaaatgtcgaagcaagtgttaaactacaaggagctgacgtttcgcgagt
ttctctccacatatgatctacataagctgatgatcaccaacaaggaaagccgtaaaagaa
gcgtggatcccatgtcgactagtcaattcattttgactcaaacatcggatgtcgagggta
actgcgtgatttgtatggaaaacatcaacgatttgcttctcccgtgcctccacgcctttt
gcatccgatgcatcgccaacgaaatggaataccgccacgatttctcatgcccgatttgca
agacaaagatcagaaaccccatcgaatcatcttgggaggtgccagatgctccagaccagg
ctgaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATCCACGATTTCAGTCATGCAC 9 371 35 Antisense
GAAATTATCGCAGTCTTCTTGTCGA 455 363 98 Antisense
AAACGAGGAGTACTTGGCCTTCGCT 126 127 123 Antisense
AAGGAGCTGACGTTTCGCGAGTTTC 388 159 253 Antisense
TGGATCCCATGTCGACTAGTCAATT 488 549 338 Antisense
AACATCAACGATTTGCTTCTCCCGT 607 135 415 Antisense
GCATCCGATGCATCGCCAACGAAAT 606 307 455 Antisense
AAATGGAATACCGCCACGATTTCTC 344 119 476 Antisense
CGATTTCTCATGCCCGATTTGCAAG 147 249 492 Antisense
TCAGAAACCCCATCGAATCATCTTG 34 623 524 Antisense
CAGATGCTCCAGACCAGGCTGAAGT 638 205 557 Antisense
Sequence Source Affymetrix Proprietary Database