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[192898_s_at] Yeast hypothetical protein YCR32 like

Description T01H10.8 /REP_DB=WormBase Gene ID /WP=CE03607 /TR=Q21547 /GB=CAA91946.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YCR32 like
Cluster 6grp_total > 67      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 72.7
(-2)
A 		39.5
(-3)
A 		51.6
(-2.6)
A 		240.6
(3)
P 		201
B 64.4
(-2.5)
P 		59.3
(-2.6)
A 		45.9
(-3)
A 		273.7
(3)
P 		228
C 81.1
(-1.9)
P 		39.2
(-3)
A 		51.4
(-2.7)
A 		265.8
(3)
P 		227
avr 72.7
(-2.3) 		46
(-3) 		49.6
(-2.9) 		260
(3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 51.9
(-3)
A 		96
(-1.4)
P 		75.5
(-2.1)
A 		61.2
(-2.7)
A 		65.8
(-2.5)
P 		217.7
(3)
P 		166
B 80.6
(-1.8)
P 		69.7
(-2.3)
A 		50.5
(-3)
A 		118.1
(-0.4)
A 		56.5
(-2.8)
P 		205.5
(3)
P 		155
C 65.9
(-3)
P 		90.4
(-2)
M 		81
(-2.4)
A 		65.4
(-3)
A 		70.1
(-2.8)
A 		220.6
(3)
P 		155
avr 66.1
(-2.9) 		85.4
(-2.2) 		69
(-2.8) 		81.6
(-2.3) 		64.1
(-3) 		214.6
(3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 26.5
(1)
A 		8.6
(-3)
A 		13.5
(-1.9)
A 		35.2
(3)
P 		27
B 20.5
(-1.8)
P 		14.7
(-2.5)
A 		10.6
(-3)
A 		58.3
(3)
P 		48
C 26.8
(-0.2)
P 		11.3
(-3)
A 		17.9
(-1.8)
A 		44.8
(3)
P 		34
avr 24.6
(-0.7) 		11.5
(-3) 		14
(-2.6) 		46.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 9.6
(-3)
A 		34.1
(0.4)
P 		16.4
(-2.1)
A 		15.5
(-2.2)
A 		19.9
(-1.6)
P 		53
(3)
P 		43
B 28
(-1.5)
P 		23.2
(-2)
A 		12.3
(-3)
A 		31.3
(-1.2)
A 		22.9
(-2)
P 		76.6
(3)
P 		64
C 24.4
(-1.9)
P 		27.6
(-1.6)
M 		20.6
(-2.3)
A 		13.2
(-3)
A 		22.7
(-2.1)
A 		73.8
(3)
P 		61
avr 20.7
(-2.5) 		28.3
(-1.6) 		16.4
(-3) 		20
(-2.6) 		21.8
(-2.4) 		67.8
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192898_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17290
Sequence Type Exemplar sequence
Representative Public ID T01H10.8 NCBI
Target Description T01H10.8 /REP_DB=WormBase Gene ID /WP=CE03607 /TR=Q21547 /GB=CAA91946.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YCR32 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077629 NCBI Caenorhabditis elegans T01H10.8 (T01H10.8) mRNA, complete cds. 11/11 None
T01H10.8 ENSEMBL cdna:known chromosome:CEL140:X:12128129:12141072:-1 gene:T01H10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12128271-12141072(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YCR32 like
Ensembl T01H10.8
Entrez Gene 181379 Entrez gene
SwissProt Q21547 EMBL-EBI
WormBase CE03607 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91946 Hypothetical protein T01H10.8 [Caenorhabditis elegans] emb|CAA91543.1| Hypothetical protein T01H10.8 [Caenorhabditis elegans] ref|NP_510030.1| T01H10.8 [Caenorhabditis elegans] 0.0
blast CAE69884 Hypothetical protein CBG16224 [Caenorhabditis briggsae] 0.0
blast XP_787612 PREDICTED: similar to lysosomal trafficking regulator [Strongylocentrotus purpuratus] 8.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR000409 EMBL-EBI Beige/BEACH domain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192898_S_AT
agtttggaatcttcacactcaccacattcgcgggtgctgcactattgaaggagttgtcga
gtcgtgtggagtgttaaaaaatcttggagaactgattgtgacagagaaatggaacggaaa
tcagatacggtttataaaaggatggagaattaagaaaagagagaccaagaagaataagta
cgttgggaaatttgctagagaacattcagagcaaattatggcaaagatcagtattaatgc
aaaacctttcatttcaaaatatatcgggaagaatcaatttgtgcacagtggtgtcatttc
aatgccgccagagcctggaatgggaattcaaacactggcaatgatacggagtgatcatgc
aattgttttattcgagacgatgaatttaactgaaatgcgagtgctggaagttgaaaatag
aatggattacagcctgagagaacttcgtttccaagaagacaactctcttattgcaatttt
caaagaaactcgatctctgcaaaaaagaaacaaagagctctacaagaatcttggatgtac
accaccaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTGGAATCTTCACACTCACCAC 514 63 7512 Antisense
CACATTCGCGGGTGCTGCACTATTG 442 193 7534 Antisense
CTATTGAAGGAGTTGTCGAGTCGTG 105 223 7553 Antisense
AGTACGTTGGGAAATTTGCTAGAGA 188 61 7688 Antisense
GAATCAATTTGTGCACAGTGGTGTC 117 327 7782 Antisense
CAGTGGTGTCATTTCAATGCCGCCA 135 209 7797 Antisense
AATGCCGCCAGAGCCTGGAATGGGA 303 167 7812 Antisense
GATCATGCAATTGTTTTATTCGAGA 318 421 7864 Antisense
TTCGTTTCCAAGAAGACAACTCTCT 599 695 7955 Antisense
AGAAACTCGATCTCTGCAAAAAAGA 563 71 7995 Antisense
GAATCTTGGATGTACACCACCAACC 49 329 8037 Antisense
Sequence Source Affymetrix Proprietary Database