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[192897_at] Zinc finger, C3HC4 type (RING finger)

Description F16A11.1 /REP_DB=WormBase Gene ID /WP=CE17679 /TR=P90839 /GB=CAB04122.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 95      6grp_total > 95      4grp_total > 63      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 684.8
(3)
P 		525.7
(-0.6)
P 		434.5
(-2.7)
P 		420.2
(-3)
P 		265
B 508.9
(0.5)
P 		418.4
(-3)
P 		572.2
(3)
P 		422.6
(-2.8)
P 		154
C 729.4
(3)
P 		500.5
(-0.8)
P 		537
(-0.2)
P 		369
(-3)
P 		360
avr 641
(3) 		481.5
(-1) 		514.6
(-0.2) 		403.9
(-3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 679
1 2 3 4 5 6 range
A 439.2
(-3)
P 		628.7
(-1.3)
P 		490.7
(-2.5)
P 		760.1
(-0.2)
P 		1118.1
(3)
P 		965.9
(1.7)
P 		679
B 546.4
(-2.9)
P 		533.5
(-3)
P 		575.5
(-2.6)
P 		789.4
(-0.3)
P 		1108.6
(3)
P 		1090.3
(2.8)
P 		575
C 516.3
(-2.4)
P 		546.9
(-2.1)
P 		450.3
(-3)
P 		1064
(3)
P 		943.1
(1.8)
P 		936.5
(1.8)
P 		614
avr 500.6
(-3) 		569.7
(-2.3) 		505.5
(-2.9) 		871.2
(1) 		1056.6
(3) 		997.6
(2.4) 		556
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 249.3
(3)
P 		114.1
(-1.3)
P 		113.6
(-1.3)
P 		61.5
(-3)
P 		188
B 162.3
(3)
P 		103.3
(-1.9)
P 		132.6
(0.5)
P 		90.1
(-3)
P 		72
C 241.5
(3)
P 		143.9
(-0.3)
P 		187.2
(1.2)
P 		62.2
(-3)
P 		179
avr 217.7
(3) 		120.4
(-1) 		144.5
(0) 		71.3
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 369
1 2 3 4 5 6 range
A 81
(-3)
P 		223.6
(0.3)
P 		106.9
(-2.4)
P 		192.8
(-0.4)
P 		337.4
(3)
P 		235.2
(0.6)
P 		256
B 190.1
(-2)
P 		177.6
(-2.3)
P 		139.7
(-3)
P 		209.1
(-1.7)
P 		450.4
(3)
P 		406.6
(2.2)
P 		311
C 191.4
(-0.7)
P 		166.9
(-1.4)
P 		114.6
(-3)
P 		214
(-0)
P 		305.2
(2.7)
P 		313.5
(3)
P 		199
avr 154.2
(-2.2) 		189.4
(-1.3) 		120.4
(-3) 		205.3
(-0.9) 		364.3
(3) 		318.4
(1.9) 		244
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.771
Sequence Type Exemplar sequence
Representative Public ID F16A11.1 NCBI
Target Description F16A11.1 /REP_DB=WormBase Gene ID /WP=CE17679 /TR=P90839 /GB=CAB04122.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060098 NCBI Caenorhabditis elegans F16A11.1 (F16A11.1) mRNA, complete cds. 11/11 None
SNAP00000004131 ENSEMBL cdna:SNAP chromosome:CEL140:I:9402588:9406522:-1 11/11 None
GENEFINDER00000004132 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9402588:9406522:-1 11/11 None
F16A11.1 ENSEMBL cdna:known chromosome:CEL140:I:9402086:9412148:-1 gene:F16A11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9402518-9412074(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl F16A11.1
Entrez Gene 172764 Entrez gene
SwissProt P90839 EMBL-EBI
WormBase CE17679 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591738_AT similar to F16A11.1 cfa
CANINE_2:CFAAFFX.13920.1.S1_AT similar to F16A11.1 cfa
CHICKEN:GGA.1145.2.S1_A_AT similar to RIKEN cDNA 4930470D19 gga
HU35KSUBB:RC_AA165677_AT KIAA1972 protein hs
HU35KSUBC:RC_AA255522_AT KIAA1972 protein hs
HU35KSUBC:RC_AA062971_AT KIAA1972 protein hs
U133_X3P:HS.181161.0.A3_3P_AT KIAA1972 protein hs
U133_X3P:HS.181161.0.A2_3P_AT KIAA1972 protein hs
U133_X3P:HS.181161.0.A1_3P_AT KIAA1972 protein hs
HG-U133_PLUS_2:225770_AT KIAA1972 protein hs
HG-U133B:225770_AT KIAA1972 protein hs
HG-U133_PLUS_2:225773_AT KIAA1972 protein hs
HG-U133B:225773_AT KIAA1972 protein hs
HG-U133_PLUS_2:225774_AT KIAA1972 protein hs
HG-U133B:225774_AT KIAA1972 protein hs
HG-U95B:54842_AT KIAA1972 protein hs
HG-U95C:49936_AT KIAA1972 protein hs
MG-U74BV2:105580_AT RIKEN cDNA 4930470D19 gene mm
MG-U74BV2:163861_AT RIKEN cDNA 4930470D19 gene mm
MOE430A:1424134_AT RIKEN cDNA 4930470D19 gene mm
MOUSE430A_2:1424134_AT RIKEN cDNA 4930470D19 gene mm
MOUSE430_2:1424134_AT RIKEN cDNA 4930470D19 gene mm
MOE430A:1424135_AT RIKEN cDNA 4930470D19 gene mm
MOUSE430A_2:1424135_AT RIKEN cDNA 4930470D19 gene mm
MOUSE430_2:1424135_AT RIKEN cDNA 4930470D19 gene mm
RAT230_2:1394441_AT similar to SPla/RYanodine receptor SPRY (1J970) (predicted) rn
RAE230B:1394441_AT similar to SPla/RYanodine receptor SPRY (1J970) (predicted) rn
RAE230B:1379221_AT similar to SPla/RYanodine receptor SPRY (1J970) (predicted) rn
RAT230_2:1379221_AT similar to SPla/RYanodine receptor SPRY (1J970) (predicted) rn
RAE230B:1385860_AT similar to SPla/RYanodine receptor SPRY (1J970) (predicted) rn
RAT230_2:1385860_AT similar to SPla/RYanodine receptor SPRY (1J970) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB04122 Hypothetical protein F16A11.1 [Caenorhabditis elegans] ref|NP_492499.1| F16A11.1 [Caenorhabditis elegans] 0.0
blast CAE74451 Hypothetical protein CBG22191 [Caenorhabditis briggsae] 0.0
blast XP_414014 PREDICTED: similar to RIKEN cDNA 4930470D19 [Gallus gallus] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.4E-33
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.4E-33
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.4E-33
Sequence
Target Sequence 
>C. ELEGANS:192897_AT
atgatttcgggaagctcagcacggagcaaagaacaattgtgccgcggaggttgaggttgg
aattgcttgaaaaagagcatatacccgaagattattgtacaatttgttttgcggctccag
ggagcacaactcttctgccatgcaatcatgatggtttctgctcggattgctgtaacatga
tggatcattgcccgttatgcagaaaaccaatagaggaaagaattcaaaaaacgaaaaata
atcgatcatttgataatgtcaaatcaccatcaaactcatccatatctgcatttgttcggg
tgaatagtcaacggaaaagcacacgtgccacgtcagcagttgccacacatcctactgata
cggttattcacaccggtatcactacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTTCGGGAAGCTCAGCACGGA 120 47 1607 Antisense
ATTGTGCCGCGGAGGTTGAGGTTGG 71 3 1642 Antisense
CAATTTGTTTTGCGGCTCCAGGGAG 702 169 1706 Antisense
CACAACTCTTCTGCCATGCAATCAT 130 195 1731 Antisense
TGATGGTTTCTGCTCGGATTGCTGT 109 567 1755 Antisense
GATGGATCATTGCCCGTTATGCAGA 640 407 1785 Antisense
AAATCACCATCAAACTCATCCATAT 482 117 1867 Antisense
CATCCATATCTGCATTTGTTCGGGT 561 211 1883 Antisense
AAAGCACACGTGCCACGTCAGCAGT 710 123 1922 Antisense
GCCACACATCCTACTGATACGGTTA 126 279 1948 Antisense
GTTATTCACACCGGTATCACTACAG 530 447 1969 Antisense
Sequence Source Affymetrix Proprietary Database