[Home] | [Total List]

[192891_s_at] ubiquitin carboxyl-terminal hydrolase

Description T05H10.1 /REP_DB=WormBase Gene ID /WP=CE13299 /TR=Q22240 /GB=CAA87795.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 74      6grp_total > 35      4grp_total > 55      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 1044.9
(3)
P 		468.9
(-2.1)
P 		531.3
(-1.6)
P 		368.1
(-3)
P 		677
B 922.2
(3)
P 		439.7
(-2.1)
P 		582.5
(-0.6)
P 		353.4
(-3)
P 		569
C 907.7
(3)
P 		417.1
(-3)
P 		626.7
(-0.4)
P 		505.3
(-1.9)
P 		491
avr 958.3
(3) 		441.9
(-2.6) 		580.2
(-1.1) 		408.9
(-3) 		549

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 756.9
(1.3)
P 		900.5
(3)
P 		403
(-3)
P 		638.3
(-0.2)
P 		457.1
(-2.3)
P 		742.8
(1.1)
P 		498
B 625.9
(0.8)
P 		698.6
(2)
P 		760.2
(3)
P 		640.4
(1)
P 		393.2
(-3)
P 		542.2
(-0.6)
P 		367
C 817.4
(2.1)
P 		616
(-0.8)
P 		807.9
(2)
P 		879.9
(3)
P 		466.7
(-3)
P 		588.7
(-1.2)
P 		413
avr 733.4
(2.9) 		738.4
(3) 		657
(1.4) 		719.5
(2.6) 		439
(-3) 		624.6
(0.7) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 380.4
(3)
P 		101.8
(-2.1)
P 		138.9
(-1.4)
P 		53.9
(-3)
P 		327
B 294.1
(3)
P 		108.6
(-2.1)
P 		135
(-1.4)
P 		75.3
(-3)
P 		219
C 300.5
(3)
P 		119.9
(-2)
P 		218.4
(0.7)
P 		85.2
(-3)
P 		215
avr 325
(3) 		110.1
(-2.1) 		164.1
(-0.8) 		71.5
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 139.5
(-1.7)
P 		320.2
(3)
P 		87.8
(-3)
P 		161.9
(-1.1)
P 		137.9
(-1.7)
P 		180.8
(-0.6)
P 		232
B 217.8
(1.8)
P 		232.5
(3)
P 		184.6
(-0.9)
P 		169.6
(-2.2)
P 		159.7
(-3)
P 		202.2
(0.5)
P 		73
C 303
(3)
P 		188
(-1.5)
P 		205.6
(-0.8)
P 		176.9
(-2)
P 		151
(-3)
P 		197.1
(-1.2)
P 		152
avr 220.1
(1.3) 		246.9
(3) 		159.3
(-2.4) 		169.5
(-1.8) 		149.5
(-3) 		193.4
(-0.3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192891_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3989
Sequence Type Exemplar sequence
Representative Public ID T05H10.1 NCBI
Target Description T05H10.1 /REP_DB=WormBase Gene ID /WP=CE13299 /TR=Q22240 /GB=CAA87795.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063285 NCBI Caenorhabditis elegans T05H10.1 (T05H10.1) mRNA, complete cds. 11/11 None
SNAP00000019961 ENSEMBL cdna:SNAP chromosome:CEL140:II:8042510:8046948:1 11/11 None
GENEFINDER00000019972 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8042510:8046948:1 11/11 None
T05H10.1 ENSEMBL cdna:known chromosome:CEL140:II:8042510:8047360:1 gene:T05H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8042506-8046945(+) 100.0 100.0
Public Domain and Genome References
Gene Title ubiquitin carboxyl-terminal hydrolase
Ensembl T05H10.1
Entrez Gene 174290 Entrez gene
SwissProt Q22240 EMBL-EBI
WormBase CE32928 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624727_S_AT Ubiquitin-specific protease 64E dm
DROSGENOME1:154827_AT Ubiquitin-specific protease 64E dm
CHICKEN:GGA.11069.1.S1_S_AT ubiquitin specific peptidase 47 gga
CHICKEN:GGA.5374.1.S1_AT ubiquitin specific peptidase 47 gga
CHICKEN:GGAAFFX.20216.1.S1_S_AT ubiquitin specific peptidase 47 gga
CHICKEN:GGAAFFX.26533.1.S1_AT ubiquitin specific peptidase 47 gga
CHICKEN:GGAAFFX.3494.1.S1_AT ubiquitin specific peptidase 47 gga
HG-U133B:223119_S_AT ubiquitin specific peptidase 47 hs
HG-U133_PLUS_2:223119_S_AT ubiquitin specific peptidase 47 hs
HG-U133_PLUS_2:223701_S_AT ubiquitin specific peptidase 47 hs
HG-U133B:223701_S_AT ubiquitin specific peptidase 47 hs
HU35KSUBA:RC_AA598675_AT ubiquitin specific peptidase 47 hs
HU35KSUBC:RC_R21877_AT ubiquitin specific peptidase 47 hs
HU35KSUBC:RC_H98700_AT ubiquitin specific peptidase 47 hs
HU35KSUBD:RC_AA358132_AT ubiquitin specific peptidase 47 hs
U133_X3P:G12001943_3P_A_AT ubiquitin specific peptidase 47 hs
U133_X3P:G12652938_3P_A_AT ubiquitin specific peptidase 47 hs
U133_X3P:HS.300700.1.S3_3P_A_AT ubiquitin specific peptidase 47 hs
U133_X3P:HS.300700.1.S2_3P_A_AT ubiquitin specific peptidase 47 hs
U133_X3P:HS.300700.1.S1_3P_A_AT ubiquitin specific peptidase 47 hs
HG-U133A_2:221518_S_AT ubiquitin specific peptidase 47 hs
HG-U133_PLUS_2:221518_S_AT ubiquitin specific peptidase 47 hs
HG-U133A:221518_S_AT ubiquitin specific peptidase 47 hs
HG-U133_PLUS_2:223117_S_AT ubiquitin specific peptidase 47 hs
HG-U133B:223117_S_AT ubiquitin specific peptidase 47 hs
HG-U133_PLUS_2:223118_S_AT ubiquitin specific peptidase 47 hs
HG-U133B:223118_S_AT ubiquitin specific peptidase 47 hs
HG-U95B:43383_S_AT ubiquitin specific peptidase 47 hs
HG-U95B:52550_S_AT ubiquitin specific peptidase 47 hs
HG-U95B:53928_AT ubiquitin specific peptidase 47 hs
HG-U95C:60436_AT ubiquitin specific peptidase 47 hs
HG-U95C:63880_AT ubiquitin specific peptidase 47 hs
HG-U95E:70055_AT ubiquitin specific peptidase 47 hs
HG-U95E:78073_AT ubiquitin specific peptidase 47 hs
HU35KSUBB:RC_R43420_AT Ubiquitin specific peptidase 47 hs
HU35KSUBB:RC_N67603_AT Ubiquitin specific peptidase 47 hs
MOUSE430A_2:1426977_AT ubiquitin specific peptidase 47 mm
MOE430A:1426977_AT ubiquitin specific peptidase 47 mm
MOUSE430_2:1426977_AT ubiquitin specific peptidase 47 mm
MG-U74CV2:171365_AT ubiquitin specific peptidase 47 mm
MOE430A:1426976_AT ubiquitin specific peptidase 47 mm
MOUSE430A_2:1426976_AT ubiquitin specific peptidase 47 mm
MOUSE430_2:1426976_AT ubiquitin specific peptidase 47 mm
MOE430B:1457454_AT ubiquitin specific peptidase 47 mm
MOUSE430_2:1457454_AT ubiquitin specific peptidase 47 mm
MU11KSUBB:MSA.39800.0_S_AT Ubiquitin specific peptidase 47, mRNA (cDNA clone IMAGE:4211195) mm
MU19KSUBB:TC31933_AT Ubiquitin specific peptidase 47, mRNA (cDNA clone IMAGE:4211195) mm
MU19KSUBC:TC39707_AT Ubiquitin specific peptidase 47, mRNA (cDNA clone IMAGE:4211195) mm
RG-U34B:RC_AA964366_AT ubiquitin specific protease 47 (predicted) rn
RAE230A:1373157_AT ubiquitin specific protease 47 (predicted) rn
RAT230_2:1373157_AT ubiquitin specific protease 47 (predicted) rn
RAE230A:1399036_AT ubiquitin specific protease 47 (predicted) rn
RAT230_2:1399036_AT ubiquitin specific protease 47 (predicted) rn
RAE230B:1381420_AT Ubiquitin specific protease 47 (predicted) rn
RAT230_2:1381420_AT Ubiquitin specific protease 47 (predicted) rn
RAE230B:1394988_AT Ubiquitin specific protease 47 (predicted) rn
RAT230_2:1394988_AT Ubiquitin specific protease 47 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6511 ubiquitin-dependent protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4221 ubiquitin thiolesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87795 Hypothetical protein T05H10.1 [Caenorhabditis elegans] ref|NP_495686.2| T05H10.1 [Caenorhabditis elegans] 0.0
blast CAE67769 Hypothetical protein CBG13344 [Caenorhabditis briggsae] 0.0
blast NP_060414 ubiquitin specific protease 47 [Homo sapiens] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 2.3E-122
Sequence
Target Sequence 
>C. ELEGANS:192891_S_AT
aaaatggttcgtctgcgcgagttgggtggatcgggagttggaactggaagagcagtacta
aatcctaatgatacattagaaaaacgatcttataactggtgttctcatctatatctgcaa
atcataactgatgaagcaatgattggaaaacctggcgagccgatcatggttcgaagattc
cgcccgtctaccgttgaagtcaatcctacacacgaagttctagttgatgcaaatgccgag
aacccagttgtatcatttgtggaagcattgtcaaaaatttcgggaattccggtggaacgt
cttgcaattactgatctgaaagaattcaattggcagaaatggccgtacttgaagagtcgc
ctcgatatgcttgaaaacaaagttaacttcacgaaagacctccaagtgacttatccactt
ccccgagaattcttagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGGTTCGTCTGCGCGAGTTGG 211 133 3283 Antisense
ACTGGTGTTCTCATCTATATCTGCA 429 97 3377 Antisense
GAAAACCTGGCGAGCCGATCATGGT 287 355 3428 Antisense
CGATCATGGTTCGAAGATTCCGCCC 181 249 3443 Antisense
AAGTCAATCCTACACACGAAGTTCT 252 157 3479 Antisense
AATGCCGAGAACCCAGTTGTATCAT 220 167 3514 Antisense
TTCCGGTGGAACGTCTTGCAATTAC 545 693 3569 Antisense
ATGGCCGTACTTGAAGAGTCGCCTC 249 51 3621 Antisense
GAGTCGCCTCGATATGCTTGAAAAC 128 401 3636 Antisense
AAGACCTCCAAGTGACTTATCCACT 45 153 3677 Antisense
TCCACTTCCCCGAGAATTCTTAGAC 19 587 3696 Antisense
Sequence Source Affymetrix Proprietary Database