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[192888_s_at] Fructose-bisphosphate aldolase class-I

Description T05D4.1 /REP_DB=WormBase Gene ID /WP=CE16341 /TR=O45747 /GB=CAB03291.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Fructose-bisphosphate aldolase class-I
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 10      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 15      6grp_total > 32      4grp_total > 53      6grp_highest_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6767
1 2 3 4 range
A 7913.4
(3)
P 		6738.1
(1.8)
P 		5142.9
(0.1)
P 		2199.3
(-3)
P 		5714
B 8664.6
(3)
P 		5432.9
(-0.1)
P 		5282.8
(-0.3)
P 		2466.3
(-3)
P 		6198
C 7888.8
(3)
P 		6283.9
(1.4)
P 		4183.4
(-0.7)
P 		1897.8
(-3)
P 		5991
avr 8155.6
(3) 		6151.6
(1) 		4869.7
(-0.3) 		2187.8
(-3) 		5968

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5026
1 2 3 4 5 6 range
A 6653.7
(3)
P 		5978.1
(1.1)
P 		5119.9
(-1.3)
P 		5007.4
(-1.6)
P 		4620.6
(-2.7)
P 		4525.8
(-3)
P 		2128
B 4508.1
(-0.2)
P 		4863.2
(0.5)
P 		6210
(3)
P 		5884.8
(2.4)
P 		3870.1
(-1.4)
P 		3037.6
(-3)
P 		3172
C 7546.9
(3)
P 		5146.9
(0.1)
P 		6949
(2.3)
P 		6262.3
(1.5)
P 		5077.3
(0.1)
P 		2520.6
(-3)
P 		5026
avr 6236.2
(3) 		5329.4
(1.1) 		6093
(2.7) 		5718.2
(1.9) 		4522.7
(-0.6) 		3361.3
(-3) 		2875
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2561
1 2 3 4 range
A 2881.3
(3)
P 		1462.7
(-0.3)
P 		1344.5
(-0.6)
P 		321.9
(-3)
P 		2559
B 2763.1
(3)
P 		1341.8
(-0.8)
P 		1224.1
(-1.1)
P 		525.6
(-3)
P 		2238
C 2611.4
(3)
P 		1806.7
(0.9)
P 		1458
(-0)
P 		320
(-3)
P 		2291
avr 2751.9
(3) 		1537.1
(-0.1) 		1342.2
(-0.6) 		389.2
(-3) 		2363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1954
1 2 3 4 5 6 range
A 1226.5
(-2.3)
P 		2126.1
(3)
P 		1115
(-2.9)
P 		1270
(-2)
P 		1394.3
(-1.3)
P 		1101.9
(-3)
P 		1024
B 1568.6
(2.4)
P 		1618.8
(3)
P 		1508
(1.6)
P 		1558.7
(2.3)
P 		1572.4
(2.4)
P 		1132.7
(-3)
P 		486
C 2797.3
(3)
P 		1570.5
(-0.8)
P 		1768.6
(-0.2)
P 		1259.4
(-1.7)
P 		1642.9
(-0.5)
P 		843.8
(-3)
P 		1954
avr 1864.1
(3) 		1771.8
(2.3) 		1463.9
(0.1) 		1362.7
(-0.6) 		1536.5
(0.7) 		1026.1
(-3) 		838
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192888_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6983
Sequence Type Exemplar sequence
Representative Public ID T05D4.1 NCBI
Target Description T05D4.1 /REP_DB=WormBase Gene ID /WP=CE16341 /TR=O45747 /GB=CAB03291.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Fructose-bisphosphate aldolase class-I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171235 NCBI Caenorhabditis elegans T05D4.1 (T05D4.1) mRNA, complete cds. 11/11 None
SNAP00000043731 ENSEMBL cdna:SNAP chromosome:CEL140:III:13562999:13564435:-1 11/11 None
GENEFINDER00000043737 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13562999:13564435:-1 11/11 None
T05D4.1.1 ENSEMBL cdna:known chromosome:CEL140:III:13562857:13564506:-1 gene:T05D4.1 11/11 None
T05D4.1.2 ENSEMBL cdna:known chromosome:CEL140:III:13562862:13564540:-1 gene:T05D4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13562994-13564431(-) 100.0 100.0
Public Domain and Genome References
Gene Title Fructose-bisphosphate aldolase class-I
Ensembl T05D4.1
Entrez Gene 176788 Entrez gene
SwissProt P54216 EMBL-EBI
WormBase CE16341 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250917_AT fructose-bisphosphate aldolase, putative at
CANINE:1597859_AT similar to Fructose-bisphosphate aldolase A (Muscle-type aldolase) (Lung cancer antigen NY-LU-1) cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6096 glycolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4332 fructose-bisphosphate aldolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03291 Hypothetical protein T05D4.1 [Caenorhabditis elegans] ref|NP_741281.1| T05D4.1 [Caenorhabditis elegans] 0.0
blast P54216 Fructose-bisphosphate aldolase 1 (Aldolase CE-1) (CE1) dbj|BAA12091.1| aldolase Ce1 [Caenorhabditis elegans] 0.0
blast CAE69264 Hypothetical protein CBG15316 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000741 EMBL-EBI Fructose-bisphosphate aldolase, class-I 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192888_S_AT
cgactccatcagtgactgctcttaaggaaattgcctccaacttggctcgctatgcttcaa
tttgccaacaaaatggacttgtaccaattgttgagccagagatcctcccagacggtgaac
actgcttggctcgcggacagaagatcaccgagaccgtgctctcatatgtgtaccacgctc
tcaacgagcatcacgtcttcctcgagggaaccctcctcaagccaaacatggtcacctccg
gacaatcattcaccggcgagaagccatcgaatgccgatatcggactcgccaccgtcaccg
ccctccaacgcggagtcccatccgccgttccaggagtcgtcttcctctccggtggacaat
ccgaagaggatgccacattgaacttgaacgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACTCCATCAGTGACTGCTCTTAA 66 253 482 Antisense
AGGAAATTGCCTCCAACTTGGCTCG 178 55 506 Antisense
AACTTGGCTCGCTATGCTTCAATTT 188 139 520 Antisense
CAGACGGTGAACACTGCTTGGCTCG 253 205 590 Antisense
GCTTGGCTCGCGGACAGAAGATCAC 705 305 605 Antisense
GACCGTGCTCTCATATGTGTACCAC 37 383 633 Antisense
TGTACCACGCTCTCAACGAGCATCA 658 559 650 Antisense
ACCTCCGGACAATCATTCACCGGCG 175 87 715 Antisense
CGAATGCCGATATCGGACTCGCCAC 382 251 749 Antisense
TTCCTCTCCGGTGGACAATCCGAAG 642 697 823 Antisense
GATGCCACATTGAACTTGAACGCCA 439 415 850 Antisense
Sequence Source Affymetrix Proprietary Database