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[192886_s_at]

Description ZK524.3 /REP_DB=WormBase Gene ID /WP=CE23463 /TR=Q23511 /GB=CAA98144.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=leucyl-tRNA synthetase (mitochondrial)
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 80      6grp_total > 44      4grp_total > 53      6grp_cgc > 82      6grp_cgc_sub > 03      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 282.3
(3)
P 		161.5
(-2.6)
P 		167
(-2.4)
P 		153.3
(-3)
P 		129
B 245.9
(3)
P 		230.6
(2.3)
P 		246
(3)
P 		117.3
(-3)
P 		129
C 245
(1.2)
P 		298.7
(3)
P 		218.6
(0.4)
P 		115.9
(-3)
P 		183
avr 257.7
(3) 		230.3
(1.7) 		210.5
(0.8) 		128.8
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 225.6
(0.6)
P 		209.3
(-0.2)
P 		273.3
(3)
P 		201.6
(-0.6)
P 		154.4
(-3)
P 		194.7
(-1)
P 		119
B 276
(-0.5)
P 		247.7
(-1.3)
P 		410.4
(3)
P 		185.1
(-2.9)
P 		181.2
(-3)
P 		206
(-2.4)
P 		229
C 162.4
(-1.9)
P 		267.4
(3)
P 		233.4
(1.4)
P 		233.3
(1.4)
P 		139.9
(-3)
P 		242.2
(1.8)
P 		128
avr 221.3
(-0.4) 		241.5
(0.4) 		305.7
(3) 		206.7
(-1) 		158.5
(-3) 		214.3
(-0.7) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 102.8
(3)
P 		35.1
(-2.1)
P 		43.7
(-1.4)
P 		22.4
(-3)
P 		80
B 78.4
(3)
P 		56.9
(0.6)
P 		57
(0.6)
P 		25
(-3)
P 		53
C 81.1
(2.6)
P 		85.9
(3)
P 		76.2
(2.1)
P 		19.5
(-3)
P 		66
avr 87.4
(3) 		59.3
(0.4) 		59
(0.4) 		22.3
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 41.6
(-3)
P 		74.4
(3)
P 		59.5
(0.3)
P 		51.1
(-1.3)
P 		46.6
(-2.1)
P 		47.4
(-1.9)
P 		33
B 96
(2.6)
P 		82.5
(1)
P 		99.7
(3)
P 		49
(-3)
P 		73.6
(-0.1)
P 		76.8
(0.3)
P 		51
C 60.2
(-0.5)
P 		81.6
(3)
P 		59.4
(-0.7)
P 		46.9
(-2.7)
P 		45.3
(-3)
P 		81.1
(2.9)
P 		36
avr 65.9
(0.3) 		79.5
(3) 		72.9
(1.7) 		49
(-3) 		55.2
(-1.8) 		68.4
(0.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192886_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1741
Sequence Type Exemplar sequence
Representative Public ID ZK524.3 NCBI
Target Description ZK524.3 /REP_DB=WormBase Gene ID /WP=CE23463 /TR=Q23511 /GB=CAA98144.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=leucyl-tRNA synthetase (mitochondrial)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026705(11), NM_001026704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026705 NCBI Caenorhabditis elegans Leucyl tRNA Synthetase family member (lrs-2) (lrs-2) mRNA, complete cds. 11/11 None
NM_001026704 NCBI Caenorhabditis elegans Leucyl tRNA Synthetase family member (lrs-2) (lrs-2) mRNA, complete cds. 11/11 None
SNAP00000017081 ENSEMBL cdna:SNAP chromosome:CEL140:I:7465431:7468881:-1 11/11 None
ZK524.3b ENSEMBL cdna:known chromosome:CEL140:I:7465281:7468884:-1 gene:ZK524.3 11/11 None
ZK524.3a ENSEMBL cdna:known chromosome:CEL140:I:7465431:7468881:-1 gene:ZK524.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7465361-7468719(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK524.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98144 Hypothetical protein ZK524.3a [Caenorhabditis elegans] ref|NP_001021875.1| Leucyl tRNA Synthetase family member (lrs-2) [Caenorhabditis elegans] 0.0
blast CAE18063 Hypothetical protein ZK524.3b [Caenorhabditis elegans] ref|NP_001021876.1| Leucyl tRNA Synthetase family member (lrs-2) [Caenorhabditis elegans] dbj|BAC76733.1| leucyl-tRNA synthetase (mitochondrial) [Caenorhabditis elegans] 0.0
blast CAE66564 Hypothetical protein CBG11879 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002300 EMBL-EBI Aminoacyl-tRNA synthetase, class Ia 7.4E-42
Pfam IPR002300 EMBL-EBI Aminoacyl-tRNA synthetase, class Ia 1.6E-31
Pfam IPR002300 EMBL-EBI Aminoacyl-tRNA synthetase, class Ia 7.4E-42
Pfam IPR002300 EMBL-EBI Aminoacyl-tRNA synthetase, class Ia 1.6E-31
Sequence
Target Sequence 
>C. ELEGANS:192886_S_AT
acttcatcttcataatactgcgttgatgagaatacagggattcactaatgcattaaagaa
agttgatccaatctacctggctcacagcccagaaggccaacgagcggtgaaatcgttgat
tattatgcttcaagttttttgtccacacgtcgcttccgaaatgtggtcagcattagctaa
tgatggttcactggtttccgatcaaaagtggcccgaagttgataaagatgctgatattga
atttcttctgatgattgatggtgttagtggtggtaggccttctcttgatcggcggattat
tgaagaaatgtctatggatcagttatgggaacgagctacattttatgaacacgcagatat
tcttcgaatgatgaaagaagatggaatgaagctgaaaaattcaagttatatttctaggaa
aggtttccacgtaactctatcgtgtagcttggaaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCATCTTCATAATACTGCGTTG 426 103 1938 Antisense
AAGTTGATCCAATCTACCTGGCTCA 538 155 1997 Antisense
CTCACAGCCCAGAAGGCCAACGAGC 578 227 2018 Antisense
ACACGTCGCTTCCGAAATGTGGTCA 527 109 2082 Antisense
AATGATGGTTCACTGGTTTCCGATC 296 165 2116 Antisense
TGGTTTCCGATCAAAAGTGGCCCGA 175 551 2129 Antisense
GTGTTAGTGGTGGTAGGCCTTCTCT 269 483 2198 Antisense
GCCTTCTCTTGATCGGCGGATTATT 410 281 2214 Antisense
TATGAACACGCAGATATTCTTCGAA 605 655 2281 Antisense
GAAAGGTTTCCACGTAACTCTATCG 137 357 2355 Antisense
AACTCTATCGTGTAGCTTGGAAGGT 197 137 2370 Antisense
Sequence Source Affymetrix Proprietary Database