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[192883_at]

Description ZC477.3 /REP_DB=WormBase Gene ID /WP=CE28163 /TR=Q23344 /GB=AAK67245.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine specific phosphatase
Cluster 6grp_total > 59      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 58.9
(-1.8)
M 		43.3
(-2.4)
A 		28.8
(-3)
A 		175.7
(3)
A 		147
B 57.2
(-0.3)
A 		78.2
(1.7)
A 		28.8
(-3)
A 		91.6
(3)
A 		63
C 69
(-0.7)
A 		62.3
(-1.5)
A 		48.7
(-3)
A 		102.5
(3)
P 		54
avr 61.7
(-1.2) 		61.3
(-1.2) 		35.4
(-3) 		123.3
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 83.4
(2.6)
A 		9.3
(-3)
A 		89.1
(3)
P 		60.5
(0.8)
A 		67.7
(1.4)
A 		71.3
(1.7)
A 		80
B 60.7
(0.3)
A 		77.5
(3)
M 		40.7
(-3)
A 		57.9
(-0.2)
A 		70.1
(1.8)
P 		77.2
(3)
A 		37
C 46
(-1.2)
A 		75.2
(3)
P 		42.7
(-1.6)
A 		55.1
(0.1)
A 		33.2
(-3)
A 		54.5
(0)
A 		42
avr 63.4
(1.1) 		54
(-3) 		57.5
(-1.5) 		57.8
(-1.3) 		57
(-1.7) 		67.7
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.4
(1.6)
M 		9.4
(-2.4)
A 		7.5
(-3)
A 		25.7
(3)
A 		18
B 18.3
(2.4)
A 		19.3
(2.9)
A 		6.7
(-3)
A 		19.5
(3)
A 		13
C 22.8
(3)
A 		17.9
(-2.1)
A 		17
(-3)
A 		17.3
(-2.7)
P 		6
avr 20.8
(3) 		15.5
(-0.1) 		10.4
(-3) 		20.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 15.4
(1.2)
A 		3.3
(-3)
A 		19.4
(2.6)
P 		15.3
(1.2)
A 		20.4
(3)
A 		17.3
(1.9)
A 		17
B 21.1
(0.6)
A 		25.8
(2)
M 		9.9
(-3)
A 		15.3
(-1.3)
A 		28.5
(2.9)
P 		28.8
(3)
A 		19
C 17.1
(0.1)
A 		23
(3)
P 		10.9
(-2.9)
A 		11.1
(-2.8)
A 		10.7
(-3)
A 		18.2
(0.7)
A 		12
avr 17.9
(0.4) 		17.4
(-0) 		13.4
(-3) 		13.9
(-2.6) 		19.9
(1.9) 		21.4
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8605
Sequence Type Exemplar sequence
Representative Public ID ZC477.3 NCBI
Target Description ZC477.3 /REP_DB=WormBase Gene ID /WP=CE28163 /TR=Q23344 /GB=AAK67245.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine specific phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068709 NCBI Caenorhabditis elegans ZC477.10 (ZC477.10) mRNA, complete cds. 11/11 None
ZC477.10 ENSEMBL cdna:known chromosome:CEL140:IV:7105816:7107717:1 gene:ZC477.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039648 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039666 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7103612-7107723(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC477.10
Entrez Gene 191183 Entrez gene
SwissProt Q95ZI8 EMBL-EBI
WormBase CE32550 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK67244 Hypothetical protein ZC477.10 [Caenorhabditis elegans] ref|NP_501110.2| ZC477.10 [Caenorhabditis elegans] 1.0E-166
blast T27606 hypothetical protein ZC477.3 - Caenorhabditis elegans 1.0E-154
blast CAE61803 Hypothetical protein CBG05769 [Caenorhabditis briggsae] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:192883_AT
gtagtcgatacgttcttcttcgtggtcagcaagaagcatcgccttctccagtatttctga
atcaactccgtgaccggttccctggaggaattggagatgatatttatgcaaaattcgtga
ctgcgttcagtttgctcccggttgcagcattggttgatgtacagttaaatttaaaaaatt
catatttgttattgtccggtgctctgtatttgaactttgaacatccagaaaagcacaagt
attacactgatcaagcagttttaaaattttgtgaaaagacacaaattgatctgattgtga
gatctcaagaggttccgccaaatggattccgttttcttgctgacaaaaagttgatcacaa
ttttttccgctgctgcttatagtaactacaaaaacaaagccgcattcttgcgagtcgata
agaacggtgcttgctcggttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTCGATACGTTCTTCTTCGTGG 402 453 971 Antisense
GTCAGCAAGAAGCATCGCCTTCTCC 9 467 995 Antisense
CTGAATCAACTCCGTGACCGGTTCC 706 233 1027 Antisense
TTCGTGACTGCGTTCAGTTTGCTCC 76 695 1084 Antisense
TGCTCCCGGTTGCAGCATTGGTTGA 698 581 1103 Antisense
ATATTTGTTATTGTCCGGTGCTCTG 214 19 1152 Antisense
GTCCGGTGCTCTGTATTTGAACTTT 59 477 1164 Antisense
GAGGTTCCGCCAAATGGATTCCGTT 235 403 1279 Antisense
GTTGATCACAATTTTTTCCGCTGCT 621 437 1320 Antisense
TTCCGCTGCTGCTTATAGTAACTAC 690 695 1335 Antisense
TAAGAACGGTGCTTGCTCGGTTGTT 620 635 1389 Antisense
Sequence Source Affymetrix Proprietary Database