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[192881_at] bacterial regulatory protein UHPC like

Description T11G6.2 /REP_DB=WormBase Gene ID /WP=CE06428 /TR=Q22409 /GB=CAA93417.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=bacterial regulatory protein UHPC like
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_high_8_8 > 27      6grp_highest_nonorm > 71      6grp_total > 04      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 462.9
(3)
P 		387.5
(-2.3)
A 		377
(-3)
A 		437.2
(1.2)
P 		86
B 442.6
(1.8)
P 		416
(-0.7)
A 		390.4
(-3)
P 		456.1
(3)
P 		66
C 394
(0.7)
P 		429.6
(3)
P 		338.4
(-3)
P 		420
(2.4)
P 		91
avr 433.2
(2.6) 		411
(0.7) 		368.6
(-3) 		437.8
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 460.8
(3)
P 		420.6
(1.7)
P 		298.3
(-2.4)
P 		378.1
(0.3)
P 		374.9
(0.2)
P 		279
(-3)
P 		182
B 417.8
(2.9)
P 		387.5
(1.8)
P 		419.5
(3)
P 		336.1
(-0.2)
P 		377.9
(1.4)
P 		264.9
(-3)
P 		155
C 446.6
(3)
P 		391.2
(1.3)
P 		370.7
(0.7)
P 		419.1
(2.2)
P 		305.5
(-1.3)
P 		249.7
(-3)
P 		197
avr 441.7
(3) 		399.8
(1.6) 		362.8
(0.3) 		377.8
(0.8) 		352.8
(-0) 		264.5
(-3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 168.6
(3)
P 		84.1
(-1.8)
A 		98.5
(-1)
A 		64
(-3)
P 		105
B 141.1
(3)
P 		102.7
(-1.6)
A 		90.5
(-3)
P 		97.2
(-2.2)
P 		51
C 130.4
(3)
P 		123.5
(2.3)
P 		117.9
(1.7)
P 		70.8
(-3)
P 		60
avr 146.7
(3) 		103.4
(-0.7) 		102.3
(-0.8) 		77.3
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 85
(-1.6)
P 		149.6
(3)
P 		65
(-3)
P 		95.9
(-0.8)
P 		113.1
(0.4)
P 		67.9
(-2.8)
P 		85
B 145.4
(2.2)
P 		129
(0.7)
P 		101.9
(-1.8)
P 		89
(-3)
P 		153.5
(3)
P 		98.8
(-2.1)
P 		65
C 165.5
(3)
P 		119.4
(-0.4)
P 		94.3
(-2.2)
P 		84.3
(-2.9)
P 		98.9
(-1.9)
P 		83.6
(-3)
P 		82
avr 132
(2.9) 		132.7
(3) 		87.1
(-2.5) 		89.7
(-2.2) 		121.8
(1.7) 		83.4
(-3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9860
Sequence Type Exemplar sequence
Representative Public ID T11G6.2 NCBI
Target Description T11G6.2 /REP_DB=WormBase Gene ID /WP=CE06428 /TR=Q22409 /GB=CAA93417.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=bacterial regulatory protein UHPC like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069611 NCBI Caenorhabditis elegans T11G6.2 (T11G6.2) mRNA, complete cds. 11/11 None
SNAP00000000767 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10855740:10857862:-1 11/11 None
GENEFINDER00000000776 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10855740:10858025:-1 11/11 None
T11G6.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:10855009:10858530:-1 gene:T11G6.2 11/11 None
T11G6.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:10855468:10858467:-1 gene:T11G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10855745-10858031(-) 100.0 100.0
Public Domain and Genome References
Gene Title bacterial regulatory protein UHPC like
Ensembl T11G6.2
Entrez Gene 177977 Entrez gene
SwissProt Q22409 EMBL-EBI
WormBase CE35615 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.6886.1.S1_AT similar to solute carrier family 37 (glycerol-3-phosphate transporter), member 3 isoform 1 cfa
CANINE_2:CFAAFFX.6889.1.S1_S_AT similar to solute carrier family 37 (glycerol-3-phosphate transporter), member 3 isoform 1 cfa
CHICKEN:GGA.8894.1.S1_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 gga
CHICKEN:GGAAFFX.20289.1.S1_S_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 gga
CHICKEN:GGAAFFX.24015.2.S1_X_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 gga
CHICKEN:GGAAFFX.24015.3.S1_S_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 gga
CHICKEN:GGAAFFX.8137.1.S1_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 gga
CHICKEN:GGAAFFX.8137.1.S1_S_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 gga
HG-U133B:223304_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HG-U133_PLUS_2:223304_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HU35KSUBB:RC_R45698_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
U133_X3P:G13276668_3P_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HG-U95C:65540_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HG-U95E:72803_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HG-U95E:72804_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
U133_X3P:HS2.407475.1.S1_3P_X_AT Solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
U133_X3P:HS2.407475.1.S1_3P_AT Solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HG-U133_PLUS_2:1569665_AT Solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HG-U133_PLUS_2:1569666_S_AT Solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HG-U95C:50563_R_AT Solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HG-U95C:52173_AT Solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
HU35KSUBC:RC_C21356_AT Solute carrier family 37 (glycerol-3-phosphate transporter), member 3 hs
MOUSE430A_2:1453915_A_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 mm
MOUSE430_2:1453915_A_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 mm
MOE430A:1453915_A_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 mm
MG-U74BV2:163136_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 mm
MOE430A:1424920_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 mm
MOUSE430A_2:1424920_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 mm
MOUSE430_2:1424920_AT solute carrier family 37 (glycerol-3-phosphate transporter), member 3 mm
Protein Similarities
Method ID Description E-Value
blast CAA93417 Hypothetical protein T11G6.2 [Caenorhabditis elegans] ref|NP_502012.2| T11G6.2 [Caenorhabditis elegans] 0.0
blast CAE70837 Hypothetical protein CBG17617 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502012.2 12 35-52,84-106,119-138,153-175,182-204,208-230,274-296,316-333,340-359,364-386,406-428,438-460
T11G6.2.1 12 35-52,84-106,119-138,153-175,182-204,208-230,274-296,316-333,340-359,364-386,406-428,438-460
T11G6.2.2 12 35-52,84-106,119-138,153-175,182-204,208-230,274-296,316-333,340-359,364-386,406-428,438-460
SNAP00000000767 11 37-59,72-91,106-128,135-157,161-183,227-249,269-286,293-312,317-339,359-381,391-413
GENEFINDER00000000776 12 28-45,77-99,112-131,146-168,175-197,201-223,267-289,309-326,333-352,357-379,399-421,431-453
Sequence
Target Sequence 
>C. ELEGANS:192881_AT
ttctggttgccatactaccttcatgctggcttgcactggcccgaatcctacgccgactca
ctttccacgtggtatgatgttggaggaatcgtggctgctgtgctcgccggagccttttcg
gatcacatgagatctcgaaccccagttgtgtttattatgctgttaatggcaactgtttca
ctttatatttatgcacattcccccgaatcctacaactggaatgcattcctcttactcgtc
gccggatttttcatcggaggaccggccaacatgatctcaagctcaattacggcagatctc
ggaaaatgtgatcaacttcgtggaaacgcggaagctctttccacagtgacgggaattatt
gatggaactggaagtattggagctgcaattggacaatggtttattccatcggttcagcat
tggtttgggtgggatgcggtgttttatggatttattgtcatgatactctgcaccgccctt
tgcttggtcccagttctttggaaagagcacaaagagcgcagaattcatcgttccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGTTGCCATACTACCTTCATG 17 695 871 Antisense
CGACTCACTTTCCACGTGGTATGAT 42 251 924 Antisense
GGAGCCTTTTCGGATCACATGAGAT 189 523 979 Antisense
ATCTCGAACCCCAGTTGTGTTTATT 1 21 1002 Antisense
TTATATTTATGCACATTCCCCCGAA 656 679 1053 Antisense
TACTCGTCGCCGGATTTTTCATCGG 257 647 1103 Antisense
GAAGCTCTTTCCACAGTGACGGGAA 227 343 1201 Antisense
GGTTTATTCCATCGGTTCAGCATTG 320 505 1268 Antisense
TTATTGTCATGATACTCTGCACCGC 318 679 1322 Antisense
TTTGCTTGGTCCCAGTTCTTTGGAA 241 669 1349 Antisense
AGAGCGCAGAATTCATCGTTCCGAA 343 69 1383 Antisense
Sequence Source Affymetrix Proprietary Database