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[192878_at] fatty-acid binding protein

Description T22G5.2 /REP_DB=WormBase Gene ID /WP=CE13984 /GEN=lbp-7 /TR=O02323 /GB=CAB03387.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=fatty-acid binding protein
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 32      6grp_total > 10      4grp_total > 50      6grp_cgc > 63      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2205
1 2 3 4 range
A 741.3
(-2.2)
P 		2558.3
(3)
P 		1863.7
(1)
P 		471.6
(-3)
P 		2087
B 798.1
(-1.3)
P 		1897.8
(3)
P 		1778.2
(2.5)
P 		375.6
(-3)
P 		1522
C 941.2
(-0.3)
P 		1625.7
(2.8)
P 		1675.5
(3)
P 		353.3
(-3)
P 		1322
avr 826.9
(-1.4) 		2027.3
(3) 		1772.5
(2.1) 		400.2
(-3) 		1627

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1303
1 2 3 4 5 6 range
A 655.8
(-2.3)
P 		1445.7
(3)
P 		1400.6
(2.7)
P 		856.8
(-1)
P 		917.8
(-0.5)
P 		552.7
(-3)
P 		893
B 687.4
(-2.7)
P 		1825.8
(3)
P 		915.3
(-1.6)
P 		858.7
(-1.9)
P 		1401.2
(0.9)
P 		632.4
(-3)
P 		1193
C 752.4
(-1.8)
P 		1632.5
(3)
P 		778.6
(-1.6)
P 		1276.4
(1.1)
P 		975.1
(-0.6)
P 		522.6
(-3)
P 		1110
avr 698.5
(-2.3) 		1634.7
(3) 		1031.5
(-0.4) 		997.3
(-0.6) 		1098
(-0) 		569.2
(-3) 		1066
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 524
1 2 3 4 range
A 269.9
(-0.5)
P 		555.3
(3)
P 		487.2
(2.2)
P 		69
(-3)
P 		486
B 254.5
(-0.3)
P 		468.7
(3)
P 		412
(2.1)
P 		80
(-3)
P 		389
C 311.6
(-0.1)
P 		467.4
(1.7)
P 		584
(3)
P 		59.6
(-3)
P 		524
avr 278.7
(-0.1) 		497.1
(3) 		494.4
(3) 		69.5
(-3) 		428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 120.9
(-3)
P 		514.2
(3)
P 		305
(-0.2)
P 		217.3
(-1.5)
P 		276.9
(-0.6)
P 		134.6
(-2.8)
P 		393
B 239.2
(-2.7)
P 		607.7
(3)
P 		222.3
(-3)
P 		227.4
(-2.9)
P 		569.3
(2.4)
P 		235.8
(-2.8)
P 		385
C 278.9
(-1.1)
P 		498.1
(3)
P 		198.2
(-2.6)
P 		256.7
(-1.5)
P 		315.5
(-0.4)
P 		175
(-3)
P 		323
avr 213
(-2.5) 		540
(3) 		241.8
(-2) 		233.8
(-2.1) 		387.2
(0.4) 		181.8
(-3) 		358
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14402
Sequence Type Exemplar sequence
Representative Public ID T22G5.2 NCBI
Target Description T22G5.2 /REP_DB=WormBase Gene ID /WP=CE13984 /GEN=lbp-7 /TR=O02323 /GB=CAB03387.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=fatty-acid binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074039 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-7) (lbp-7) mRNA, complete cds. 11/11 None
SNAP00000016894 ENSEMBL cdna:SNAP chromosome:CEL140:V:13882145:13882703:1 11/11 None
GENEFINDER00000016903 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13882145:13882703:1 11/11 None
T22G5.2 ENSEMBL cdna:known chromosome:CEL140:V:13882145:13882703:1 gene:T22G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13882144-13882703(+) 100.0 100.0
Public Domain and Genome References
Gene Title fatty-acid binding protein
Gene Symbol lbp-7
Ensembl T22G5.2
Entrez Gene 191701 Entrez gene
SwissProt O02323 EMBL-EBI
WormBase CE13984 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03387 Hypothetical protein T22G5.2 [Caenorhabditis elegans] ref|NP_506440.1| Lipid Binding Protein family member (lbp-7) [Caenorhabditis elegans] sp|O02323|FABP7_CAEEL Fatty acid-binding protein homolog 2.0E-76
blast CAE66215 Hypothetical protein CBG11457 [Caenorhabditis briggsae] 5.0E-64
blast CAE66214 Hypothetical protein CBG11456 [Caenorhabditis briggsae] 3.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 4.2E-26
Sequence
Target Sequence 
>C. ELEGANS:192878_AT
gttggtccaaaccgagaactttgatgaatacatgaaggaaatcggagtcgggctcatcac
aagaaaggctgctgctcatttgaagccaatattggaaatccgattggatggagagacatg
gaactttgatcaattctcaacattcaagaacacgaaattgtctttcaagttaggagagga
attcgttgagaacagtccagatgatcgtacctacaactctctgttcacttttgaaaacgg
aaaactgactcatcgtcagaacaagatcaaggagaatcacaaaagttcagttctgacaac
atggcttgaaaacggaaaactcattcaaacctatcaatctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGTCCAAACCGAGAACTTTGAT 39 435 48 Antisense
GGAAATCGGAGTCGGGCTCATCACA 285 527 84 Antisense
GGCTCATCACAAGAAAGGCTGCTGC 3 539 98 Antisense
GCTGCTGCTCATTTGAAGCCAATAT 255 297 115 Antisense
GACATGGAACTTTGATCAATTCTCA 475 369 162 Antisense
CGTTGAGAACAGTCCAGATGATCGT 375 247 231 Antisense
AGATGATCGTACCTACAACTCTCTG 228 67 246 Antisense
TACAACTCTCTGTTCACTTTTGAAA 184 643 259 Antisense
AAAACGGAAAACTGACTCATCGTCA 410 131 281 Antisense
GTTCAGTTCTGACAACATGGCTTGA 463 443 332 Antisense
AACTCATTCAAACCTATCAATCTGG 189 141 365 Antisense
Sequence Source Affymetrix Proprietary Database