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[192874_at]

Description F20D6.4 /REP_DB=WormBase Gene ID /WP=CE07109 /GEN=srp-7 /TR=Q19650 /GB=AAB37055.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=serine protease inhibitor
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 36      6grp_total > 70      4grp_total > 62      6grp_highest_sub > 03_04      6grp_cgc > 94      6grp_high1_sub > 03_04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1919
1 2 3 4 range
A 3977.2
(3)
P 		2863.4
(-0.7)
P 		3631
(1.9)
P 		2159.6
(-3)
P 		1818
B 3815.1
(3)
P 		2957.5
(-1.4)
P 		3286.8
(0.3)
P 		2652.9
(-3)
P 		1162
C 3498.5
(3)
P 		3131.8
(1.5)
P 		3339.7
(2.3)
P 		2058.5
(-3)
P 		1440
avr 3763.6
(3) 		2984.2
(-0.2) 		3419.2
(1.6) 		2290.3
(-3) 		1473

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2112
1 2 3 4 5 6 range
A 3601.1
(-3)
P 		3986.5
(-1.8)
P 		4052.9
(-1.6)
P 		5571.6
(3)
P 		3801.7
(-2.4)
P 		4261.6
(-1)
P 		1971
B 3899.9
(-0.7)
P 		3459.4
(-3)
P 		4631.8
(3)
P 		4112.6
(0.3)
P 		3869.8
(-0.9)
P 		3793.2
(-1.3)
P 		1172
C 3863.1
(-1.8)
P 		3468.2
(-3)
P 		5332.8
(2.5)
P 		5509.4
(3)
P 		4057
(-1.3)
P 		4080.8
(-1.2)
P 		2041
avr 3788
(-2.4) 		3638
(-3) 		4672.5
(1.4) 		5064.5
(3) 		3909.5
(-1.9) 		4045.2
(-1.3) 		1427
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1132
1 2 3 4 range
A 1448.1
(3)
P 		621.6
(-1.4)
P 		949.2
(0.4)
P 		316.1
(-3)
P 		1132
B 1216.6
(3)
P 		730.4
(-1.5)
P 		761.6
(-1.2)
P 		565.3
(-3)
P 		651
C 1158.1
(3)
P 		900.4
(1.1)
P 		1164
(3)
P 		347.1
(-3)
P 		817
avr 1274.3
(3) 		750.8
(-0.6) 		958.3
(0.8) 		409.5
(-3) 		865

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 909
1 2 3 4 5 6 range
A 663.8
(-3)
P 		1417.8
(3)
P 		882.6
(-1.3)
P 		1413.1
(3)
P 		1147.2
(0.8)
P 		1037.6
(-0)
P 		754
B 1357
(0.3)
P 		1151.5
(-2.2)
P 		1124.7
(-2.6)
P 		1089.3
(-3)
P 		1572.3
(3)
P 		1414.5
(1)
P 		483
C 1431.9
(3)
P 		1058.3
(-3)
P 		1357.3
(1.8)
P 		1108
(-2.2)
P 		1312.8
(1.1)
P 		1366.1
(1.9)
P 		374
avr 1150.9
(-2.2) 		1209.2
(-0.6) 		1121.5
(-3) 		1203.5
(-0.8) 		1344.1
(3) 		1272.7
(1.1) 		223
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12419
Sequence Type Exemplar sequence
Representative Public ID F20D6.4 NCBI
Target Description F20D6.4 /REP_DB=WormBase Gene ID /WP=CE07109 /GEN=srp-7 /TR=Q19650 /GB=AAB37055.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=serine protease inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028653(9), NM_001028652(9), NM_001028651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028653 NCBI Caenorhabditis elegans SeRPin family member (srp-7) (srp-7) mRNA, complete cds. 9/11 None
NM_001028652 NCBI Caenorhabditis elegans SeRPin family member (srp-7) (srp-7) mRNA, complete cds. 9/11 None
NM_001028651 NCBI Caenorhabditis elegans SeRPin family member (srp-7) (srp-7) mRNA, complete cds. 11/11 None
SNAP00000033161 ENSEMBL cdna:SNAP chromosome:CEL140:V:8184018:8185474:1 11/11 None
GENEFINDER00000033168 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8184018:8185474:1 11/11 None
F20D6.4b ENSEMBL cdna:known chromosome:CEL140:V:8184017:8185786:1 gene:F20D6.4 9/11 None
F20D6.4a ENSEMBL cdna:known chromosome:CEL140:V:8184018:8185583:1 gene:F20D6.4 11/11 None
F20D6.4c ENSEMBL cdna:known chromosome:CEL140:V:8184018:8186033:1 gene:F20D6.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8184018-8185475(+) 100.0 100.0
Public Domain and Genome References
Ensembl F20D6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81199 Serpin protein 7, isoform c [Caenorhabditis elegans] ref|NP_001023824.1| SeRPin family member (srp-7) [Caenorhabditis elegans] gb|AAS13533.1| serine or cysteine protease inhibitor [Caenorhabditis elegans] 0.0
blast AAT81198 Serpin protein 7, isoform b [Caenorhabditis elegans] ref|NP_001023823.1| SeRPin family member (srp-7) [Caenorhabditis elegans] gb|AAS13532.1| serine or cysteine protease inhibitor [Caenorhabditis elegans] 0.0
blast AAB37055 Serpin protein 7, isoform a [Caenorhabditis elegans] ref|NP_001023822.1| SeRPin family member (srp-7) [Caenorhabditis elegans] gb|AAS13531.1| serine or cysteine protease inhibitor [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 2.59999990463257
Pfam IPR000215 EMBL-EBI Serpin 6.0E-86
Pfam IPR000215 EMBL-EBI Serpin 1.7E-83
Pfam IPR000215 EMBL-EBI Serpin 8.1E-79
Sequence
Target Sequence 
>C. ELEGANS:192874_AT
catgcctccagtgtctcgagagattacgccgaaaatgatcaattccaagttctcagtctt
ccatataaggacaacacatttgcactcacaattttccttccaaaaacccgtttcggattg
accgagtcgctcaaaactctggattctgcaactattcaacaccttctatcaaatgtctcc
agtacttcggttaatgttcaaattccaaagtggaagattgagacaaagttgggactcgaa
gaagctcttcaatcgctcggaattaaaaaagcgttcgataatgatgcagatcttggaaat
atggcagatggcctctacgtttcaaaagtcactcacaaagctctcattgaggttgacgaa
gaaggaaccaaagccgctgcagctactactgtatcaatttcgctcaagtcagccatgttc
gta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCCTCCAGTGTCTCGAGAGATT 374 211 598 Antisense
GATCAATTCCAAGTTCTCAGTCTTC 505 421 634 Antisense
TTTGCACTCACAATTTTCCTTCCAA 674 667 676 Antisense
GTCGCTCAAAACTCTGGATTCTGCA 203 475 723 Antisense
TGCAACTATTCAACACCTTCTATCA 437 577 744 Antisense
ATGTCTCCAGTACTTCGGTTAATGT 190 49 770 Antisense
GAAGCTCTTCAATCGCTCGGAATTA 152 343 838 Antisense
GATGGCCTCTACGTTTCAAAAGTCA 697 405 904 Antisense
AAAAGTCACTCACAAAGCTCTCATT 102 133 921 Antisense
GCTACTACTGTATCAATTTCGCTCA 333 303 979 Antisense
TTCGCTCAAGTCAGCCATGTTCGTA 1 697 996 Antisense
Sequence Source Affymetrix Proprietary Database