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[192873_s_at]

Description B0564.7 /REP_DB=WormBase Gene ID /WP=CE05181 /TR=Q17532 /GB=CAA97769.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 58      4grp_high_8_8 > 26      6grp_highest_nonorm > 93      6grp_total > 69      4grp_total > 38      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 448.5
(3)
P 		326.7
(-3)
P 		350.4
(-1.8)
P 		406.1
(0.9)
P 		122
B 388.6
(0.6)
P 		447.8
(3)
P 		332
(-1.7)
P 		300.6
(-3)
P 		147
C 531.1
(3)
P 		385.2
(-0.9)
P 		306.5
(-3)
P 		381.4
(-1)
P 		225
avr 456.1
(3) 		386.6
(-0.3) 		329.6
(-3) 		362.7
(-1.4) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 373.5
(-1.5)
P 		334.4
(-2.1)
P 		275.1
(-3)
P 		390
(-1.2)
P 		383.4
(-1.3)
P 		661.7
(3)
P 		387
B 376.3
(-0.3)
P 		319.4
(-2)
P 		283.7
(-3)
P 		330.9
(-1.6)
P 		367.7
(-0.6)
P 		490.1
(3)
P 		206
C 310.4
(-3)
P 		317
(-2.9)
P 		310.5
(-3)
P 		360
(-1.9)
P 		414.1
(-0.7)
P 		576
(3)
P 		266
avr 353.4
(-1.7) 		323.6
(-2.3) 		289.8
(-3) 		360.3
(-1.5) 		388.4
(-0.9) 		575.9
(3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 163.3
(3)
P 		70.9
(-2.3)
P 		91.6
(-1.1)
P 		59.4
(-3)
P 		104
B 123.9
(3)
P 		110.6
(1.7)
P 		76.9
(-1.7)
P 		64.1
(-3)
P 		60
C 175.8
(3)
P 		110.7
(-0.5)
P 		106.8
(-0.7)
P 		64.3
(-3)
P 		112
avr 154.3
(3) 		97.4
(-0.7) 		91.8
(-1.1) 		62.6
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 68.8
(-2.5)
P 		118.9
(0.5)
P 		59.9
(-3)
P 		98.9
(-0.7)
P 		115.7
(0.3)
P 		161.1
(3)
P 		101
B 130.9
(0.3)
P 		106.3
(-1)
P 		68.9
(-3)
P 		87.7
(-2)
P 		149.4
(1.2)
P 		182.8
(3)
P 		114
C 115.1
(-0.9)
P 		96.7
(-1.8)
P 		79
(-2.7)
P 		72.4
(-3)
P 		134
(0.1)
P 		192.8
(3)
P 		120
avr 104.9
(-1.1) 		107.3
(-0.9) 		69.3
(-3) 		86.3
(-2.1) 		133
(0.5) 		178.9
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192873_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8704
Sequence Type Exemplar sequence
Representative Public ID B0564.7 NCBI
Target Description B0564.7 /REP_DB=WormBase Gene ID /WP=CE05181 /TR=Q17532 /GB=CAA97769.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026107 NCBI Caenorhabditis elegans B0564.11 (B0564.11) mRNA, complete cds. 11/11 None
SNAP00000043353 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13105310:13109592:1 9/11 None
GENEFINDER00000043363 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13105310:13106578:1 11/11 None
B0564.11 ENSEMBL cdna:known chromosome:CEL140:IV:13105307:13106838:1 gene:B0564.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13100691-13106584(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0564.11
Entrez Gene 3565977 Entrez gene
SwissProt Q6BET5 EMBL-EBI
WormBase CE36970 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAH04641 Hypothetical protein B0564.11 [Caenorhabditis elegans] ref|NP_001021278.1| B0564.11 [Caenorhabditis elegans] 0.0
blast CAH04641 Hypothetical protein B0564.11 [Caenorhabditis elegans] ref|NP_001021278.1| B0564.11 [Caenorhabditis elegans] 1.0E-158
blast CAA97764 Hypothetical protein B0564.2 [Caenorhabditis elegans] ref|NP_502522.1| B0564.2 [Caenorhabditis elegans] 7.0E-81
blast CAE58654 Hypothetical protein CBG01823 [Caenorhabditis briggsae] 4.0E-74
blast CAA22083 Hypothetical protein Y75B8A.10 [Caenorhabditis elegans] ref|NP_499583.1| Y75B8A.10 [Caenorhabditis elegans] 3.0E-66
blast CAE58655 Hypothetical protein CBG01824 [Caenorhabditis briggsae] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 8.4E-5
Sequence
Target Sequence 
>C. ELEGANS:192873_S_AT
accaagacaactaatgccaccatcgaaacgatcaatgaaactttacctgattctcccggt
ggaagagtcaaatatcatggtgctatctgagaaggcatacggatcactccagctcatgaa
gaaacatcggaaaatgggccagccacctcaacgagtcgggtgctacattaactttaattg
ccaaacatcgaaagtcatgttcgggtgtggacacgtctattgtgagcaatgcttgaattc
ttggaatgataaaccctgctccgtgtgcttgaaaccggtaactagtgaaccaactcagct
caaactgcggcaaggtccgtgtcctttcgatttgtgcagtccaaacagcagtactatggg
aatcgttctaattccatgcggatgtcatgtgatgtgccaaaatctggaggatgcgtacga
acgaaacaaacaccaccttgaaccacttatagaaaaaatcaagtattgtcctttcgagcc
ctgcaggatccgtgtccgtaaactcaaaaagcccttctggcaccaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAAGACAACTAATGCCACCATCG 58 85 2187 Antisense
TTTACCTGATTCTCCCGGTGGAAGA 52 643 2228 Antisense
CATACGGATCACTCCAGCTCATGAA 644 213 2282 Antisense
CAGCCACCTCAACGAGTCGGGTGCT 326 201 2326 Antisense
TGGAATGATAAACCCTGCTCCGTGT 311 547 2428 Antisense
GAACCAACTCAGCTCAAACTGCGGC 395 345 2473 Antisense
TGTCCTTTCGATTTGTGCAGTCCAA 577 557 2506 Antisense
CAAACACCACCTTGAACCACTTATA 516 189 2613 Antisense
ATCAAGTATTGTCCTTTCGAGCCCT 348 27 2644 Antisense
TGCAGGATCCGTGTCCGTAAACTCA 491 577 2668 Antisense
TCAAAAAGCCCTTCTGGCACCAACA 639 627 2690 Antisense
Sequence Source Affymetrix Proprietary Database