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[192869_at] Zinc finger, C3HC4 type (RING finger)

Description T01G5.7 /REP_DB=WormBase Gene ID /WP=CE12986 /TR=O18012 /GB=CAB03269.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 78      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 35.4
(-0.6)
A 		9
(-3)
A 		32.3
(-0.8)
A 		74
(3)
A 		65
B 39
(2.6)
A 		41
(3)
A 		7.2
(-3)
A 		38.8
(2.6)
A 		34
C 60.3
(0.1)
A 		6.4
(-3)
A 		8.3
(-2.9)
A 		111.3
(3)
P 		105
avr 44.9
(-0) 		18.8
(-2.7) 		15.9
(-3) 		74.7
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 13.8
(-2.6)
A 		5.8
(-3)
A 		17
(-2.4)
A 		36.7
(-1.5)
A 		96.7
(1.5)
M 		126.6
(3)
P 		121
B 45.5
(-1.1)
A 		40.5
(-1.3)
A 		41.5
(-1.3)
A 		2.3
(-3)
A 		78.3
(0.3)
A 		138.7
(3)
P 		136
C 37.3
(-3)
A 		43.8
(-2.6)
P 		45.9
(-2.4)
A 		66.4
(-1.1)
A 		53.9
(-1.9)
A 		127
(3)
P 		90
avr 32.2
(-2.9) 		30
(-3) 		34.8
(-2.7) 		35.1
(-2.7) 		76.3
(-0.2) 		130.8
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.9
(3)
A 		2
(-3)
A 		8.4
(0.5)
A 		10.8
(1.8)
A 		11
B 12.4
(3)
A 		10.1
(1.7)
A 		1.7
(-3)
A 		8.3
(0.7)
A 		11
C 20
(3)
A 		1.8
(-3)
A 		2.9
(-2.6)
A 		18.8
(2.6)
P 		18
avr 15.1
(3) 		4.6
(-2.8) 		4.3
(-3) 		12.6
(1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 2.5
(-2.9)
A 		2
(-3)
A 		3.7
(-2.6)
A 		9.3
(-1.5)
A 		29.2
(2.7)
M 		30.8
(3)
P 		29
B 15.8
(-1.2)
A 		13.5
(-1.5)
A 		10.1
(-1.9)
A 		0.6
(-3)
A 		31.8
(0.7)
A 		51.7
(3)
P 		51
C 13.8
(-2.6)
A 		13.4
(-2.7)
P 		11.7
(-3)
A 		13.3
(-2.7)
A 		17.4
(-1.9)
A 		42.5
(3)
P 		31
avr 10.7
(-2.5) 		9.6
(-2.7) 		8.5
(-2.9) 		7.7
(-3) 		26.1
(0.2) 		41.7
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14330
Sequence Type Exemplar sequence
Representative Public ID T01G5.7 NCBI
Target Description T01G5.7 /REP_DB=WormBase Gene ID /WP=CE12986 /TR=O18012 /GB=CAB03269.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074325 NCBI Caenorhabditis elegans T01G5.7 (T01G5.7) mRNA, complete cds. 11/11 None
SNAP00000029269 ENSEMBL cdna:SNAP chromosome:CEL140:V:15114553:15116014:1 10/11 None
GENEFINDER00000029278 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15114553:15116709:1 10/11 None
T01G5.7 ENSEMBL cdna:known chromosome:CEL140:V:15114553:15116356:1 gene:T01G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15114552-15116356(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl T01G5.7
Entrez Gene 187960 Entrez gene
SwissProt O18012 EMBL-EBI
WormBase CE12986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03269 Hypothetical protein T01G5.7 [Caenorhabditis elegans] ref|NP_506726.1| T01G5.7 [Caenorhabditis elegans] 0.0
blast CAB03269 Hypothetical protein T01G5.7 [Caenorhabditis elegans] ref|NP_506726.1| T01G5.7 [Caenorhabditis elegans] 1.0E-174
blast CAB03269 Hypothetical protein T01G5.7 [Caenorhabditis elegans] ref|NP_506726.1| T01G5.7 [Caenorhabditis elegans] 1.0E-146
blast CAA16350 Hypothetical protein Y45F10B.9 [Caenorhabditis elegans] ref|NP_502624.1| Y45F10B.9 [Caenorhabditis elegans] 5.0E-33
blast CAA16351 Hypothetical protein Y45F10B.8 [Caenorhabditis elegans] ref|NP_502615.1| Y45F10B.8 [Caenorhabditis elegans] 6.0E-33
blast CAA16350 Hypothetical protein Y45F10B.9 [Caenorhabditis elegans] ref|NP_502624.1| Y45F10B.9 [Caenorhabditis elegans] 9.0E-33
blast CAA16351 Hypothetical protein Y45F10B.8 [Caenorhabditis elegans] ref|NP_502615.1| Y45F10B.8 [Caenorhabditis elegans] 1.0E-32
blast CAA16350 Hypothetical protein Y45F10B.9 [Caenorhabditis elegans] ref|NP_502624.1| Y45F10B.9 [Caenorhabditis elegans] 2.0E-32
blast CAA16351 Hypothetical protein Y45F10B.8 [Caenorhabditis elegans] ref|NP_502615.1| Y45F10B.8 [Caenorhabditis elegans] 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.6E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029278 1 273-295
Sequence
Target Sequence 
>C. ELEGANS:192869_AT
gaggagcttggaaacgacgcgaaacgatataggagtgaattggaatctgctcacgaagag
ctctatcagacatacaccatctttgacaaagaaaaatccgatctgtgtgagctgattgag
gaacaaacaaagaaattgacagaatcgaatgccaagcaggagtcccgtaaagagtgcccg
atttgctgttggaattatgacaacgaagatagacttcccagagtaatggactgcggtcac
actatgtgccacacgtgtattatcagtaccatcaacgagtccgatacagaaccaatttgc
ccatttgacagagagccgatgtttggacccatcacacttggcccacttgacccataccag
ctcccacaaaatcgtttttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAGCTTGGAAACGACGCGAAAC 377 403 406 Antisense
AGCTCTATCAGACATACACCATCTT 116 81 464 Antisense
GAAAAATCCGATCTGTGTGAGCTGA 516 355 496 Antisense
AGGAGTCCCGTAAAGAGTGCCCGAT 383 55 563 Antisense
AGTGCCCGATTTGCTGTTGGAATTA 130 59 578 Antisense
ATGGACTGCGGTCACACTATGTGCC 538 45 631 Antisense
GTGCCACACGTGTATTATCAGTACC 14 479 651 Antisense
TTATCAGTACCATCAACGAGTCCGA 522 677 665 Antisense
TACAGAACCAATTTGCCCATTTGAC 701 643 690 Antisense
GATGTTTGGACCCATCACACTTGGC 566 409 723 Antisense
CCAGCTCCCACAAAATCGTTTTTAT 335 273 762 Antisense
Sequence Source Affymetrix Proprietary Database