[Home] | [Total List]

[192867_s_at] WD domain, G-beta repeat (6 domains)

Description F08G12.2 /REP_DB=WormBase Gene ID /WP=CE18578 /TR=Q19211 /GB=CAA91460.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat (6 domains)
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 51      6grp_total > 34      4grp_total > 50      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 661.5
(-2.2)
P 		784.1
(3)
P 		756
(1.8)
P 		641.6
(-3)
P 		143
B 598.4
(-2.6)
P 		833.2
(3)
P 		812.1
(2.5)
P 		580.7
(-3)
P 		253
C 614.8
(-0.7)
P 		930.6
(3)
P 		821.3
(1.7)
P 		419.8
(-3)
P 		511
avr 624.9
(-1.5) 		849.3
(3) 		796.5
(2) 		547.4
(-3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 679.2
(3)
P 		505.3
(-0.4)
P 		679.2
(3)
P 		458
(-1.3)
P 		371.1
(-3)
P 		458.8
(-1.3)
P 		308
B 744.6
(3)
P 		525.9
(-1)
P 		730.4
(2.7)
P 		466.5
(-2.1)
P 		416.3
(-3)
P 		457.6
(-2.2)
P 		328
C 601
(3)
P 		487
(-0.5)
P 		522.4
(0.6)
P 		431.4
(-2.1)
P 		403.2
(-3)
P 		551.7
(1.5)
P 		198
avr 674.9
(3) 		506.1
(-0.6) 		644
(2.3) 		452
(-1.8) 		396.9
(-3) 		489.4
(-1) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 240.8
(3)
P 		170.2
(0.1)
P 		197.6
(1.2)
P 		93.9
(-3)
P 		147
B 190.8
(1.9)
P 		205.8
(3)
P 		188.2
(1.7)
P 		123.7
(-3)
P 		82
C 203.5
(0.7)
P 		267.5
(2.5)
P 		286.2
(3)
P 		70.8
(-3)
P 		215
avr 211.7
(2.4) 		214.5
(2.6) 		224
(3) 		96.1
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 125.2
(-1.8)
P 		179.7
(3)
P 		147.9
(0.2)
P 		116.2
(-2.6)
P 		112
(-3)
P 		111.7
(-3)
P 		68
B 259.1
(3)
P 		175
(-0.7)
P 		177.4
(-0.6)
P 		123.6
(-3)
P 		169.1
(-1)
P 		170.6
(-0.9)
P 		136
C 222.8
(3)
P 		148.6
(-0.3)
P 		133
(-1)
P 		86.8
(-3)
P 		130.5
(-1.1)
P 		184.7
(1.3)
P 		136
avr 202.4
(3) 		167.8
(0.8) 		152.8
(-0.2) 		108.9
(-3) 		137.2
(-1.2) 		155.7
(0) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192867_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16772
Sequence Type Exemplar sequence
Representative Public ID F08G12.2 NCBI
Target Description F08G12.2 /REP_DB=WormBase Gene ID /WP=CE18578 /TR=Q19211 /GB=CAA91460.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat (6 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077485 NCBI Caenorhabditis elegans F08G12.2 (F08G12.2) mRNA, complete cds. 11/11 None
SNAP00000008600 ENSEMBL cdna:SNAP chromosome:CEL140:X:11298176:11299524:-1 11/11 None
GENEFINDER00000008632 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11298176:11300085:-1 11/11 None
F08G12.2 ENSEMBL cdna:known chromosome:CEL140:X:11298070:11299598:-1 gene:F08G12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11298175-11299524(-) 100.0 100.0
Public Domain and Genome References
Gene Title WD domain, G-beta repeat (6 domains)
Ensembl F08G12.2
Entrez Gene 181319 Entrez gene
SwissProt Q19211 EMBL-EBI
WormBase CE18578 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260606_AT transducin family protein / WD-40 repeat family protein at
CANINE:1585029_AT similar to WD-repeat protein 57 cfa
CANINE_2:CFA.10918.1.A1_AT similar to WD-repeat protein 57 cfa
CANINE_2:CFA.19899.1.S1_S_AT similar to WD-repeat protein 57 cfa
CANINE_2:CFAAFFX.17408.1.S1_AT similar to WD-repeat protein 57 cfa
DROSOPHILA_2:1634783_S_AT dm
DROSGENOME1:152919_AT dm
DROSOPHILA_2:1633301_AT dm
DROSGENOME1:153310_AT dm
DROSOPHILA_2:1632171_A_AT dm
CHICKEN:GGA.7711.2.S1_AT WD repeat domain 57 (U5 snRNP specific) gga
CHICKEN:GGA.7711.2.S1_S_AT WD repeat domain 57 (U5 snRNP specific) gga
HG-U95AV2:41370_AT WD repeat domain 57 (U5 snRNP specific) hs
HG-U133_PLUS_2:215905_S_AT WD repeat domain 57 (U5 snRNP specific) hs
HG-U133A_2:215905_S_AT WD repeat domain 57 (U5 snRNP specific) hs
HG-FOCUS:215905_S_AT WD repeat domain 57 (U5 snRNP specific) hs
HG-U133A:215905_S_AT WD repeat domain 57 (U5 snRNP specific) hs
HU35KSUBA:RC_AA040882_AT WD repeat domain 57 (U5 snRNP specific) hs
U133_X3P:HS.10290.1.S1_3P_A_AT WD repeat domain 57 (U5 snRNP specific) hs
HG-U95B:44416_AT WD repeat domain 57 (U5 snRNP specific) hs
HG-U95E:74074_AT WD repeat domain 57 (U5 snRNP specific) hs
HU35KSUBB:RC_H47542_AT WD repeat domain 57 (U5 snRNP specific) hs
RAE230A:1372173_AT similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
RAT230_2:1372173_AT similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
RAE230A:1375397_AT Similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
RAT230_2:1375397_AT Similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
RAE230B:1377985_AT Similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
RAT230_2:1377985_AT Similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
RAE230B:1394672_AT Similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
RAT230_2:1394672_AT Similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
RG-U34B:RC_AI010050_AT Similar to U5 snRNP-specific protein (Prp8-binding) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA91460 Hypothetical protein F08G12.2 [Caenorhabditis elegans] ref|NP_509886.1| F08G12.2 [Caenorhabditis elegans] 0.0
blast CAE70667 Hypothetical protein CBG17375 [Caenorhabditis briggsae] 1.0E-174
blast CAE70667 Hypothetical protein CBG17375 [Caenorhabditis briggsae] 1.0E-172
blast AAK68197 Hypothetical protein C18E3.5 [Caenorhabditis elegans] ref|NP_491325.1| C18E3.5 [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.8E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.8E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.8E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.8E-6
Sequence
Target Sequence 
>C. ELEGANS:192867_S_AT
tctcgtcgtggtgtaactcttgtcgcttctgccagtgacgatggaacatgtcgtgtgcat
gatatgagaaccaaggaaccagtgaagacttacaccaaccgataccagcagacagcagtt
acattcaatgattcttcggatcaagtgattagtggtggaattgacaacgtgctcaaagtt
tgggacatgcgtcgtgacgagattacttacactctgactggacatcgtgacacaattact
ggaatctctttgtcaccaagtgggaaattcatcatttccaattcaatggattgcactgtt
cgacaatgggatattcgaccattcgtaccaggacaacgttcggtgggagtttttgctggt
cataatcacaatttcgagaagaaccttctcaaatgttcttggtcgccatgtgagagattc
atcactgctggctcgtcggatcgttttctctacgtctgggaaacactgtcgaaaaaaatt
gtgtacaagcttccaggtcacatgggaagtgtcaactgtaccgatttccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGTCGTGGTGTAACTCTTGTCG 560 609 406 Antisense
GTCGCTTCTGCCAGTGACGATGGAA 402 475 427 Antisense
CCAACCGATACCAGCAGACAGCAGT 520 275 500 Antisense
TACTTACACTCTGACTGGACATCGT 680 643 609 Antisense
GGAATCTCTTTGTCACCAAGTGGGA 129 533 646 Antisense
GATATTCGACCATTCGTACCAGGAC 38 427 715 Antisense
TTCGGTGGGAGTTTTTGCTGGTCAT 584 691 744 Antisense
TGAGAGATTCATCACTGCTGGCTCG 559 567 816 Antisense
CTCTACGTCTGGGAAACACTGTCGA 671 229 853 Antisense
GTGTACAAGCTTCCAGGTCACATGG 66 487 886 Antisense
AGTGTCAACTGTACCGATTTCCACC 652 59 913 Antisense
Sequence Source Affymetrix Proprietary Database