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[192866_at] serine/threoninie protein phophatase

Description F20D6.6 /REP_DB=WormBase Gene ID /WP=CE07111 /TR=Q19646 /GB=AAB37051.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=serine-threoninie protein phophatase
Cluster 6grp_high1_10_10 > 89      4grp_high_8_8 > 29      6grp_total > 98      4grp_total > 19      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 56.7
(-1.5)
P 		69.5
(-0.7)
A 		33.6
(-3)
P 		125.5
(3)
P 		92
B 51.7
(0.1)
A 		22.3
(-3)
A 		78.6
(3)
P 		63.7
(1.4)
P 		56
C 57
(-0.6)
P 		94.8
(2)
P 		21.5
(-3)
A 		109.9
(3)
P 		88
avr 55.1
(-1.9) 		62.2
(-1.1) 		44.6
(-3) 		99.7
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 43.8
(-3)
A 		51.1
(-2.7)
M 		46
(-2.9)
P 		71.3
(-1.8)
P 		107.8
(-0.1)
P 		177.5
(3)
P 		134
B 73.3
(-2)
P 		64.9
(-2.2)
P 		34.2
(-3)
A 		95.4
(-1.4)
P 		253.1
(2.7)
P 		265.6
(3)
P 		231
C 38.3
(-2.2)
A 		54.7
(-1.3)
P 		24.2
(-3)
A 		56.1
(-1.2)
P 		80.1
(0.1)
P 		131.3
(3)
P 		107
avr 51.8
(-2.3) 		56.9
(-2.2) 		34.8
(-3) 		74.3
(-1.5) 		147
(1.3) 		191.5
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.6
(3)
P 		15.1
(0.2)
A 		8.8
(-3)
P 		18.4
(1.9)
P 		12
B 16.5
(2.2)
A 		5.5
(-3)
A 		18.2
(3)
P 		13.6
(0.8)
P 		13
C 18.9
(0.5)
P 		27.3
(3)
P 		7.5
(-3)
A 		18.5
(0.3)
P 		20
avr 18.7
(3) 		16
(0.8) 		11.5
(-3) 		16.8
(1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 8.1
(-3)
A 		18.2
(-1.3)
M 		10
(-2.7)
P 		18.1
(-1.3)
P 		32.5
(1.2)
P 		43.2
(3)
P 		35
B 25.5
(-1.9)
P 		21.6
(-2.2)
P 		8.3
(-3)
A 		25.3
(-1.9)
P 		102.8
(3)
P 		99.1
(2.8)
P 		95
C 14.2
(-1.7)
A 		16.7
(-1.3)
P 		6.2
(-3)
A 		11.3
(-2.2)
P 		25.9
(0.1)
P 		43.9
(3)
P 		38
avr 15.9
(-2.1) 		18.8
(-1.8) 		8.2
(-3) 		18.2
(-1.9) 		53.7
(2.1) 		62.1
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192866_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11680
Sequence Type Exemplar sequence
Representative Public ID F20D6.6 NCBI
Target Description F20D6.6 /REP_DB=WormBase Gene ID /WP=CE07111 /TR=Q19646 /GB=AAB37051.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=serine-threoninie protein phophatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072702 NCBI Caenorhabditis elegans F20D6.6 (F20D6.6) mRNA, complete cds. 11/11 None
SNAP00000033157 ENSEMBL cdna:SNAP chromosome:CEL140:V:8162544:8164116:1 11/11 None
GENEFINDER00000033169 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8162544:8167778:1 11/11 None
F20D6.6 ENSEMBL cdna:known chromosome:CEL140:V:8163022:8164116:1 gene:F20D6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8163022-8164117(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threoninie protein phophatase
Ensembl F20D6.6
Entrez Gene 184725 Entrez gene
SwissProt Q19646 EMBL-EBI
WormBase CE07111 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM29675 Hypothetical protein F20D6.5 [Caenorhabditis elegans] ref|NP_505104.2| F20D6.5 [Caenorhabditis elegans] 0.0
blast T16116 hypothetical protein F20D6.5 - Caenorhabditis elegans 0.0
blast AAB37051 Hypothetical protein F20D6.6 [Caenorhabditis elegans] ref|NP_505103.1| F20D6.6 [Caenorhabditis elegans] 1.0E-146
blast AAB37051 Hypothetical protein F20D6.6 [Caenorhabditis elegans] ref|NP_505103.1| F20D6.6 [Caenorhabditis elegans] 1.0E-144
blast CAE66118 Hypothetical protein CBG11338 [Caenorhabditis briggsae] 1.0E-128
blast CAE66118 Hypothetical protein CBG11338 [Caenorhabditis briggsae] 1.0E-112
blast XP_718094 protein phosphatase Q [Candida albicans SC5314] ref|XP_718028.1| protein phosphatase Q [Candida albicans SC5314] gb|EAK99161.1| hypothetical protein CaO19.5758 [Candida albicans SC5314] gb|EAK99087.1| hypothetical protein CaO19.13181 [Candida albicans SC5314] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.1E-6
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.1E-6
Sequence
Target Sequence 
>C. ELEGANS:192866_AT
aatttgctatcctcagaattttgtgattcttcgcggattttatgaacatgagctggtcaa
atcagacagaagcttcattggtgaattgcgtgtaagattcccggattccaacaagtggca
agctctgaatgcaattatcaaaagtcttctgaaacgtcttccagtcatgacggtcttgaa
cagaaaactgttgtgtgtcaatggaatggtgacgtcaaacatcaagaatgagaagaatgt
ggtctcagtgaaaaatggaaacatgtttgaaaatcataatactcgcgtggaagttcaatt
tttggatattgacatcccatccccagttacaccaaacaagattgacgaagaatcgaaaat
tatcaaggagctactgaagtcgatggatatgagcatgatgattaattcaaataatgtagt
cagagaaggctatcgattcactctcaaaaaccagcttatcaccatcaccagtggcacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGCTATCCTCAGAATTTTGTG 168 173 210 Antisense
ATTTTGTGATTCTTCGCGGATTTTA 4 15 227 Antisense
TTGCGTGTAAGATTCCCGGATTCCA 206 703 295 Antisense
GATTCCCGGATTCCAACAAGTGGCA 428 433 305 Antisense
GTCTTCCAGTCATGACGGTCTTGAA 231 469 365 Antisense
AATACTCGCGTGGAAGTTCAATTTT 16 173 487 Antisense
TTTGGATATTGACATCCCATCCCCA 215 667 510 Antisense
CATCCCCAGTTACACCAAACAAGAT 615 199 527 Antisense
GGCTATCGATTCACTCTCAAAAACC 565 537 637 Antisense
TCAAAAACCAGCTTATCACCATCAC 692 629 653 Antisense
TTATCACCATCACCAGTGGCACAAA 88 681 665 Antisense
Sequence Source Affymetrix Proprietary Database