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[192865_s_at] serine threonine protein phosphatase

Description F40E3.5 /REP_DB=WormBase Gene ID /WP=CE10166 /TR=O01550 /GB=AAC24292.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine threonine protein phosphatase
Cluster 6grp_high1_10_10 > 99      6grp_total > 99      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 644
1 2 3 4 range
A 72.4
(-2.4)
P 		25.4
(-3)
A 		21.4
(-3)
A 		536.6
(3)
P 		515
B 91
(-2.1)
P 		7.8
(-3)
A 		14.6
(-2.9)
A 		563.8
(3)
P 		556
C 73.3
(-2.5)
P 		36.2
(-2.9)
P 		20.8
(-3)
A 		651.9
(3)
P 		631
avr 78.9
(-2.4) 		23.1
(-3) 		18.9
(-3) 		584.1
(3) 		565

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 5.7
(-3)
A 		26.5
(-1.6)
A 		11.3
(-2.6)
A 		47.9
(-0.2)
P 		96.8
(3)
P 		77
(1.7)
P 		91
B 26.6
(-3)
P 		35.7
(-2.1)
P 		43.9
(-1.3)
P 		35.2
(-2.1)
A 		86.5
(3)
P 		56
(-0.1)
P 		60
C 30.3
(-3)
P 		44.6
(-1.9)
P 		44.3
(-1.9)
P 		34.3
(-2.7)
A 		65.4
(-0.4)
P 		110
(3)
P 		80
avr 20.9
(-3) 		35.6
(-1.6) 		33.2
(-1.8) 		39.1
(-1.2) 		82.9
(3) 		81
(2.8) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 26.4
(-1.3)
P 		5.5
(-3)
A 		5.6
(-3)
A 		78.5
(3)
P 		73
B 29
(-1.6)
P 		1.9
(-3)
A 		3.4
(-2.9)
A 		120.1
(3)
P 		118
C 24.2
(-2)
P 		10.4
(-2.8)
P 		7.3
(-3)
A 		109.9
(3)
P 		103
avr 26.5
(-1.7) 		5.9
(-3) 		5.4
(-3) 		102.8
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 1.1
(-3)
A 		9.4
(-1.2)
A 		2.5
(-2.7)
A 		12.1
(-0.7)
P 		29.2
(3)
P 		18.8
(0.8)
P 		28
B 9.3
(-3)
P 		11.9
(-2.4)
P 		10.7
(-2.7)
P 		9.3
(-3)
A 		35.1
(3)
P 		20.9
(-0.3)
P 		26
C 11.2
(-2.1)
P 		13.6
(-1.7)
P 		11.3
(-2.1)
P 		6.9
(-3)
A 		21.2
(-0.1)
P 		36.8
(3)
P 		30
avr 7.2
(-3) 		11.6
(-1.8) 		8.2
(-2.7) 		9.4
(-2.4) 		28.5
(3) 		25.5
(2.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192865_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.144
Sequence Type Exemplar sequence
Representative Public ID F40E3.5 NCBI
Target Description F40E3.5 /REP_DB=WormBase Gene ID /WP=CE10166 /TR=O01550 /GB=AAC24292.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058618 NCBI Caenorhabditis elegans F40E3.5 (F40E3.5) mRNA, complete cds. 11/11 None
SNAP00000025934 ENSEMBL cdna:SNAP chromosome:CEL140:I:2645310:2648039:-1 11/11 None
GENEFINDER00000025940 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2645310:2648039:-1 11/11 None
F40E3.5.1 ENSEMBL cdna:known chromosome:CEL140:I:2645283:2657234:-1 gene:F40E3.5 11/11 None
F40E3.5.2 ENSEMBL cdna:known chromosome:CEL140:I:2645310:2657242:-1 gene:F40E3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2645309-2648039(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine threonine protein phosphatase
Ensembl F40E3.5
Entrez Gene 171824 Entrez gene
SwissProt O01550 EMBL-EBI
WormBase CE10166 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24292 Hypothetical protein F40E3.5 [Caenorhabditis elegans] ref|NP_491019.1| F40E3.5 [Caenorhabditis elegans] 0.0
blast CAE60505 Hypothetical protein CBG04124 [Caenorhabditis briggsae] 1.0E-151
Sequence
Target Sequence 
>C. ELEGANS:192865_S_AT
gaaggaatggctgatggcacgtggaattgaacgagacgtggatttggaagaatgcatgat
tgaaatgaagagagcgtgtagtatgatgtcggccgctgctgtgatcgactcgaagattct
ttgcatgcctggagggcctggaccaacgattcgggagaagggattgcagaagcttgtggg
actgaagaagggtgttcaagcgatcgctgataagaagctgcttatggaagcctcgtggtc
ggtgcttttactcgatgatgcacagaaggatatgcatggaatgccgtttttcacaccgca
acaagccaccgacttctgcaaggccaacaatctgaaatgcattgtacgaggacgtcaaat
ggtggatgaaggttatctgaacaagcctagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAATGGCTGATGGCACGTGGA 54 335 483 Antisense
GCGTGTAGTATGATGTCGGCCGCTG 313 291 556 Antisense
CCGCTGCTGTGATCGACTCGAAGAT 322 263 575 Antisense
GACTCGAAGATTCTTTGCATGCCTG 436 373 589 Antisense
TTCTTTGCATGCCTGGAGGGCCTGG 122 689 599 Antisense
GGCCTGGACCAACGATTCGGGAGAA 425 543 617 Antisense
AGGGATTGCAGAAGCTTGTGGGACT 587 57 641 Antisense
GAAGGGTGTTCAAGCGATCGCTGAT 26 335 669 Antisense
TTATGGAAGCCTCGTGGTCGGTGCT 529 681 704 Antisense
GGTCGGTGCTTTTACTCGATGATGC 522 501 719 Antisense
GAAGGTTATCTGAACAAGCCTAGAG 140 335 850 Antisense
Sequence Source Affymetrix Proprietary Database