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[192864_at] Zinc finger, C3HC4 type (RING finger)

Description C30F2.2 /REP_DB=WormBase Gene ID /WP=CE05340 /TR=Q18328 /GB=CAA94578.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 12      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 201.7
(3)
A 		118.3
(-1.3)
A 		86.5
(-3)
A 		149.8
(0.3)
A 		115
B 160.3
(2.2)
A 		99.3
(-1.4)
A 		72.3
(-3)
A 		173.4
(3)
A 		101
C 173.5
(3)
A 		97.1
(-1.2)
A 		64.4
(-3)
A 		161.4
(2.3)
A 		109
avr 178.5
(3) 		104.9
(-1.2) 		74.4
(-3) 		161.5
(2) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 128.3
(3)
A 		106.1
(1.1)
A 		77.4
(-1.3)
A 		96.1
(0.3)
A 		89.9
(-0.3)
A 		58
(-3)
A 		70
B 57
(-1.2)
A 		137.9
(3)
A 		52.5
(-1.4)
A 		77.2
(-0.1)
A 		84.4
(0.2)
A 		21.8
(-3)
A 		116
C 139
(2.1)
A 		155.2
(3)
A 		114.8
(0.8)
A 		61.4
(-2.1)
A 		43.9
(-3)
A 		69.8
(-1.6)
A 		111
avr 108.1
(1.2) 		133.1
(3) 		81.6
(-0.7) 		78.2
(-1) 		72.7
(-1.4) 		49.9
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 73.4
(3)
A 		25.7
(-2.6)
A 		22.6
(-2.9)
A 		21.9
(-3)
A 		52
B 51.1
(3)
A 		24.5
(-1.7)
A 		16.8
(-3)
A 		37
(0.5)
A 		34
C 57.4
(3)
A 		27.9
(-2.1)
A 		22.4
(-3)
A 		27.2
(-2.2)
A 		35
avr 60.6
(3) 		26
(-2.2) 		20.6
(-3) 		28.7
(-1.8) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 23.7
(-0.6)
A 		37.7
(3)
A 		16.9
(-2.3)
A 		24.4
(-0.4)
A 		27.1
(0.3)
A 		14.1
(-3)
A 		24
B 19.8
(-1.1)
A 		45.9
(3)
A 		12.7
(-2.3)
A 		20.5
(-1)
A 		34.3
(1.2)
A 		8.1
(-3)
A 		38
C 51.5
(3)
A 		47.4
(2.4)
A 		29.2
(-0.4)
A 		12.4
(-3)
A 		14.2
(-2.7)
A 		23.4
(-1.3)
A 		39
avr 31.7
(0.5) 		43.7
(3) 		19.6
(-2.1) 		19.1
(-2.2) 		25.2
(-0.9) 		15.2
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17525
Sequence Type Exemplar sequence
Representative Public ID C30F2.2 NCBI
Target Description C30F2.2 /REP_DB=WormBase Gene ID /WP=CE05340 /TR=Q18328 /GB=CAA94578.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078230(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078230 NCBI Caenorhabditis elegans C30F2.2 (C30F2.2) mRNA, complete cds. 9/11 None
GENEFINDER00000029825 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16076759:16078984:-1 10/11 None
C30F2.2 ENSEMBL cdna:known chromosome:CEL140:X:16076723:16085128:-1 gene:C30F2.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030539 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16077359-16078821(-) 83.7 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl C30F2.2
Entrez Gene 183053 Entrez gene
SwissProt Q18328 EMBL-EBI
WormBase CE31422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94578 Hypothetical protein C30F2.2 [Caenorhabditis elegans] ref|NP_510631.2| C30F2.2 [Caenorhabditis elegans] 1.0E-107
blast CAE69997 Hypothetical protein CBG16404 [Caenorhabditis briggsae] 5.0E-86
blast CAA94578 Hypothetical protein C30F2.2 [Caenorhabditis elegans] ref|NP_510631.2| C30F2.2 [Caenorhabditis elegans] 8.0E-83
blast CAE69997 Hypothetical protein CBG16404 [Caenorhabditis briggsae] 1.0E-72
blast CAE56161 Hypothetical protein CBG23781 [Caenorhabditis briggsae] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:192864_AT
agtgcatttgtttttccacttctacgatttcaaagggaggcgcataaactgcaaacaaaa
aaataacaaatggtattttttgtcaaaatacataagcgttgtcaaaaagtggtggtggat
tttaaaatctgtgtttttttgttttacaaaatcaattttgatttcagacgacaactctca
tcgtccttgtgttggattttgtggtcattcgatatgtttgaagtgccaatcaaaaattgt
gtatgtttgcagatttcaattaaaaactaaagtgctcaacgtttccagaagctgtcccct
ctgcaaacgcaagaatgcatttttcggaaccgtcattaactaccagctactagattcctg
cttggcaatccgacaacttctgaacgaaccaatgagccctgtcccaggcgccaaatcgcc
ggttcgtgggcgagcgacgagccagaaaagagccacggaaacgccaaatatttcgcaaca
ggttgtaaatgctacccgacgaagtcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCATTTGTTTTTCCACTTCTAC 485 59 78 Antisense
AACTCTCATCGTCCTTGTGTTGGAT 359 141 250 Antisense
ACTAAAGTGCTCAACGTTTCCAGAA 700 99 343 Antisense
TGTCCCCTCTGCAAACGCAAGAATG 685 537 370 Antisense
TCGGAACCGTCATTAACTACCAGCT 504 599 401 Antisense
ACTACCAGCTACTAGATTCCTGCTT 549 101 416 Antisense
ATTCCTGCTTGGCAATCCGACAACT 232 9 431 Antisense
TCTGAACGAACCAATGAGCCCTGTC 561 607 456 Antisense
CGCCAAATCGCCGGTTCGTGGGCGA 124 257 486 Antisense
TTCGTGGGCGAGCGACGAGCCAGAA 619 651 500 Antisense
GTAAATGCTACCCGACGAAGTCGAC 218 461 562 Antisense
Sequence Source Affymetrix Proprietary Database