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[192856_at] Zinc finger, C3HC4 type (RING finger)

Description ZK287.5 /REP_DB=WormBase Gene ID /WP=CE06614 /TR=Q23457 /GB=CAA94801.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 77      6grp_total > 95      4grp_total > 17      6grp_highest_sub > In      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 878
1 2 3 4 range
A 1172
(-2.6)
P 		1229.1
(-2.2)
P 		1120.2
(-3)
P 		1895.9
(3)
P 		776
B 1018.3
(-3)
P 		1202.7
(-1.3)
P 		1206.8
(-1.3)
P 		1674.2
(3)
P 		656
C 1044.6
(-3)
P 		1373.5
(0.7)
P 		1340.9
(0.3)
P 		1581.1
(3)
P 		537
avr 1078.3
(-3) 		1268.4
(-1.2) 		1222.6
(-1.6) 		1717.1
(3) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 1249.6
(-2.2)
P 		1210.6
(-3)
P 		1272.3
(-1.7)
P 		1498.9
(3)
P 		1351.3
(-0.1)
P 		1309.5
(-0.9)
P 		288
B 1125
(-3)
P 		1165.9
(-2.2)
P 		1217
(-1.3)
P 		1232.3
(-1)
P 		1449.4
(3)
P 		1445.4
(2.9)
P 		324
C 1261.4
(-0.8)
P 		1165
(-3)
P 		1212.9
(-1.9)
P 		1376.9
(1.8)
P 		1431.5
(3)
P 		1427.5
(2.9)
P 		267
avr 1212
(-2.2) 		1180.5
(-3) 		1234.1
(-1.6) 		1369.4
(1.9) 		1410.7
(3) 		1394.1
(2.6) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 426.7
(3)
P 		266.8
(-3)
P 		292.8
(-2)
P 		277.5
(-2.6)
P 		160
B 324.7
(0.5)
P 		297
(-1.6)
P 		279.6
(-3)
P 		356.8
(3)
P 		77
C 345.8
(-0.6)
P 		394.9
(0.8)
P 		467.3
(3)
P 		266.6
(-3)
P 		201
avr 365.7
(3) 		319.6
(-1.2) 		346.6
(1.2) 		300.3
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 230.3
(-3)
P 		430.6
(3)
P 		277.1
(-1.6)
P 		380.1
(1.5)
P 		407.8
(2.3)
P 		318.8
(-0.3)
P 		200
B 391.4
(-1)
P 		388.1
(-1.1)
P 		295.5
(-3)
P 		326.4
(-2.4)
P 		588.9
(3)
P 		539
(2)
P 		293
C 467.6
(2.7)
P 		355.5
(-0.7)
P 		308.7
(-2.1)
P 		276.9
(-3)
P 		463.2
(2.6)
P 		477.9
(3)
P 		201
avr 363.1
(-0.8) 		391.4
(0) 		293.8
(-3) 		327.8
(-1.9) 		486.6
(3) 		445.2
(1.7) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11837
Sequence Type Exemplar sequence
Representative Public ID ZK287.5 NCBI
Target Description ZK287.5 /REP_DB=WormBase Gene ID /WP=CE06614 /TR=Q23457 /GB=CAA94801.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073095 NCBI Caenorhabditis elegans yeast RBX (ring finger protein) homolog family member (rbx-1) (rbx-1) mRNA, complete cds. 11/11 None
SNAP00000034524 ENSEMBL cdna:SNAP chromosome:CEL140:V:9692536:9693103:-1 11/11 None
GENEFINDER00000034530 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9692536:9693103:-1 11/11 None
ZK287.5.1 ENSEMBL cdna:known chromosome:CEL140:V:9692300:9693198:-1 gene:ZK287.5 11/11 None
ZK287.5.2 ENSEMBL cdna:known chromosome:CEL140:V:9692330:9693105:-1 gene:ZK287.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9692535-9693103(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Gene Symbol rbx-1
Ensembl ZK287.5
Entrez Gene 179358 Entrez gene
SwissProt Q23457 EMBL-EBI
WormBase CE06614 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252767_AT ring-box protein Roc1/Rbx1/Hrt1, putative at
CANINE:1587393_S_AT similar to RING-box protein 1 (Rbx1) cfa
DROSOPHILA_2:1624478_AT Hsp70 promoter construct of Noureddine dm
DROSGENOME1:144079_AT Hsp70 promoter construct of Noureddine dm
CHICKEN:GGA.1476.1.S1_AT ring-box 1 gga
HG-U133_PLUS_2:218117_AT ring-box 1 hs
HG-FOCUS:218117_AT ring-box 1 hs
HG-U133A:218117_AT ring-box 1 hs
HG-U133A_2:218117_AT ring-box 1 hs
HU35KSUBA:AA091605_AT ring-box 1 hs
U133_X3P:G7657507_3P_AT ring-box 1 hs
HG-U95E:72434_AT Ring-box 1 hs
MOUSE430_2:1438623_X_AT ring-box 1 mm
MOE430A:1438623_X_AT ring-box 1 mm
MOUSE430A_2:1438623_X_AT ring-box 1 mm
MU11KSUBA:AA521893_S_AT ring-box 1 mm
MG-U74AV2:95124_I_AT ring-box 1 mm
MG-U74AV2:95125_F_AT ring-box 1 mm
MOE430A:1448387_AT ring-box 1 mm
MOUSE430A_2:1448387_AT ring-box 1 mm
MOUSE430_2:1448387_AT ring-box 1 mm
MOE430A:1416577_A_AT ring-box 1 mm
MOUSE430A_2:1416577_A_AT ring-box 1 mm
MOUSE430_2:1416577_A_AT ring-box 1 mm
MOE430A:1416578_AT ring-box 1 mm
MOUSE430A_2:1416578_AT ring-box 1 mm
MOUSE430_2:1416578_AT ring-box 1 mm
MOUSE430_2:1440061_AT Ring-box 1, mRNA (cDNA clone MGC:35907 IMAGE:4952242) mm
MOE430B:1440061_AT Ring-box 1, mRNA (cDNA clone MGC:35907 IMAGE:4952242) mm
MOUSE430_2:1447793_X_AT Ring-box 1, mRNA (cDNA clone MGC:35907 IMAGE:4952242) mm
MOE430B:1447793_X_AT Ring-box 1, mRNA (cDNA clone MGC:35907 IMAGE:4952242) mm
MU19KSUBA:TC18622_AT Ring-box 1, mRNA (cDNA clone MGC:35907 IMAGE:4952242) mm
MU19KSUBB:TC34551_I_AT Ring-box 1, mRNA (cDNA clone MGC:35907 IMAGE:4952242) mm
MU19KSUBC:TC35178_AT Ring-box 1, mRNA (cDNA clone MGC:35907 IMAGE:4952242) mm
RG-U34B:RC_AA850733_AT Ring-box 1 (predicted) rn
RG-U34B:RC_AA850733_G_AT Ring-box 1 (predicted) rn
RG-U34C:RC_AI104143_AT Ring-box 1 (predicted) rn
RAE230A:1388333_AT Ring-box 1 (predicted) rn
RAT230_2:1388333_AT Ring-box 1 (predicted) rn
RAE230A:1388538_AT Ring-box 1 (predicted) rn
RAT230_2:1388538_AT Ring-box 1 (predicted) rn
RAE230B:1393406_AT Ring-box 1 (predicted) rn
RAT230_2:1393406_AT Ring-box 1 (predicted) rn
RG-U34C:RC_AI070865_AT Ring-box 1 (predicted) rn
RG-U34C:RC_AI072683_AT Ring-box 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA94801 Hypothetical protein ZK287.5 [Caenorhabditis elegans] ref|NP_505496.1| yeast RBX (ring finger protein) homolog family member (rbx-1) [Caenorhabditis elegans] sp|Q23457|RBX1_CAEEL RING-box protein 1 (Rbx1) (Ce-rbx-1) 4.0E-64
blast CAE72229 Hypothetical protein CBG19342 [Caenorhabditis briggsae] 3.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 9.1E-6
Sequence
Target Sequence 
>C. ELEGANS:192856_AT
gcaagcgacagcacagctatggaggtcgaggaggccacaaatcagacagttaagaagcgt
ttcgaggtcaagaaatggagtgccgtcgcactttgggcctgggacattcaggtcgacaac
tgcgctatttgccgcaatcacatcatggatctgtgcatcgagtgccaagcgaatcaagca
gccgggctcaaggatgagtgtaccgttgcatggggaaactgtaatcacgctttccacttc
cattgcatttctcgttggctgaagacacgacaggtatgcccattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGCGACAGCACAGCTATGGAGG 261 321 22 Antisense
GGAGGTCGAGGAGGCCACAAATCAG 537 515 42 Antisense
AATGGAGTGCCGTCGCACTTTGGGC 232 163 95 Antisense
GGGCCTGGGACATTCAGGTCGACAA 708 489 116 Antisense
GGTCGACAACTGCGCTATTTGCCGC 698 499 132 Antisense
TTGCCGCAATCACATCATGGATCTG 222 701 150 Antisense
GGATCTGTGCATCGAGTGCCAAGCG 539 511 168 Antisense
GCCAAGCGAATCAAGCAGCCGGGCT 92 279 185 Antisense
GGATGAGTGTACCGTTGCATGGGGA 159 509 213 Antisense
GAAACTGTAATCACGCTTTCCACTT 534 357 236 Antisense
AAGACACGACAGGTATGCCCATTGG 195 151 283 Antisense
Sequence Source Affymetrix Proprietary Database