[Home] | [Total List]

[192854_at] CDC2/CDC28 subfamily of ser/thr protein kinases

Description C36B7.2 /REP_DB=WormBase Gene ID /WP=CE04173 /GB=AAK68228.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=CDC2-CDC28 subfamily of ser-thr protein kinases
Cluster 6grp_total > 44      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 79.2
(3)
A 		26
(-3)
A 		40.1
(-1.4)
A 		72.6
(2.3)
A 		53
B 23.2
(-3)
A 		54.5
(-0.5)
A 		33.9
(-2.2)
A 		99
(3)
A 		76
C 83.2
(3)
A 		19.9
(-2.2)
A 		10.5
(-3)
A 		44.1
(-0.2)
A 		73
avr 61.9
(1.6) 		33.5
(-2.3) 		28.2
(-3) 		71.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 46.5
(0.6)
A 		48
(0.8)
A 		63.5
(3)
A 		30.1
(-1.8)
A 		39.4
(-0.5)
A 		21.6
(-3)
A 		42
B 42.3
(-0.3)
A 		55
(3)
A 		51.9
(2.2)
A 		32.7
(-2.7)
A 		31.7
(-3)
A 		38
(-1.4)
A 		23
C 40.3
(-0.8)
A 		41.5
(-0.7)
A 		45
(-0.1)
A 		26.5
(-3)
A 		52.9
(1.1)
A 		64.8
(3)
P 		38
avr 43
(0.3) 		48.2
(1.7) 		53.5
(3) 		29.8
(-3) 		41.3
(-0.1) 		41.5
(-0) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 28.9
(3)
A 		5.7
(-3)
A 		10.5
(-1.8)
A 		10.6
(-1.7)
A 		23
B 7.4
(-3)
A 		13.5
(-0.3)
A 		7.9
(-2.8)
A 		21.1
(3)
A 		14
C 27.5
(3)
A 		5.7
(-2.5)
A 		3.6
(-3)
A 		7.4
(-2)
A 		24
avr 21.3
(3) 		8.3
(-2.6) 		7.3
(-3) 		13
(-0.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.6
(-1.3)
A 		17.1
(3)
A 		13.8
(1.3)
A 		7.6
(-1.8)
A 		11.9
(0.4)
A 		5.3
(-3)
A 		12
B 14.7
(0.7)
A 		18.3
(3)
A 		12.6
(-0.6)
A 		8.7
(-3)
A 		12.9
(-0.4)
A 		14.2
(0.4)
A 		10
C 14.9
(0.5)
A 		12.7
(-0.3)
A 		11.5
(-0.7)
A 		5.3
(-3)
A 		17.1
(1.3)
A 		21.7
(3)
P 		16
avr 12.7
(0.7) 		16
(3) 		12.6
(0.7) 		7.2
(-3) 		14
(1.6) 		13.7
(1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192854_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16573
Sequence Type Exemplar sequence
Representative Public ID C36B7.2 NCBI
Target Description C36B7.2 /REP_DB=WormBase Gene ID /WP=CE04173 /GB=AAK68228.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=CDC2-CDC28 subfamily of ser-thr protein kinases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076797 NCBI Caenorhabditis elegans C36B7.2 (C36B7.2) mRNA, complete cds. 11/11 None
SNAP00000024838 ENSEMBL cdna:SNAP chromosome:CEL140:X:7106390:7108384:1 11/11 None
GENEFINDER00000024845 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7106390:7108384:1 11/11 None
C36B7.2 ENSEMBL cdna:known chromosome:CEL140:X:7104807:7108384:1 gene:C36B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7104805-7108383(+) 100.0 100.0
Public Domain and Genome References
Gene Title CDC2/CDC28 subfamily of ser/thr protein kinases
Ensembl C36B7.2
Entrez Gene 183254 Entrez gene
SwissProt Q966P6 EMBL-EBI
WormBase CE04173 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_509198 C36B7.2 [Caenorhabditis elegans] gb|AAK68228.1| Hypothetical protein C36B7.2 [Caenorhabditis elegans] 0.0
blast NP_509199 C36B7.1 [Caenorhabditis elegans] gb|AAK68227.1| Hypothetical protein C36B7.1 [Caenorhabditis elegans] 9.0E-51
blast NP_509199 C36B7.1 [Caenorhabditis elegans] gb|AAK68227.1| Hypothetical protein C36B7.1 [Caenorhabditis elegans] 1.0E-50
blast BAE01199.1 unnamed protein product [Macaca fascicularis] 2.0E-41
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-15
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-16
hanks 3.1.3 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk3 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-48
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-48
Sequence
Target Sequence 
>C. ELEGANS:192854_AT
atcacgaccatgtgcagtgccaatccatgttctacagagcaccggaagcatttgttcgtg
ggagatacaatggagccaccgatatgtggtcttttggatgtaccgttgctgaaatggttt
ctggaaaaatttttctcgctggtgacaattgcgatgatcaattctatttgatgcaagaag
tgattaacatcccgcctccagtgtttttcgacacattctacaccaactactatttcttct
ctactcttaaggaagcaccgaagcatatagttatcactgatcacggaccgattgtcagct
tcatttacacaaaggccgcagatcaccgcaaaattccgggagcaacgccgattggttctt
tcttcactaaaacagagcagaaacctttcaacaatttcattctgaaagttttcaagtgga
tgccagccagccgtatcactgcaaaacaggcactggatcatccgttcttctactcgcttt
ctgcatgcttcaatcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACGACCATGTGCAGTGCCAATC 268 29 1055 Antisense
CAGTGCCAATCCATGTTCTACAGAG 661 205 1069 Antisense
CAAGAAGTGATTAACATCCCGCCTC 426 185 1228 Antisense
TTTTTCGACACATTCTACACCAACT 160 673 1258 Antisense
TACACCAACTACTATTTCTTCTCTA 228 643 1273 Antisense
GATCACGGACCGATTGTCAGCTTCA 629 421 1333 Antisense
AAAGGCCGCAGATCACCGCAAAATT 597 119 1365 Antisense
CCGGGAGCAACGCCGATTGGTTCTT 264 265 1390 Antisense
TTTTCAAGTGGATGCCAGCCAGCCG 1 675 1463 Antisense
ACAGGCACTGGATCATCCGTTCTTC 180 107 1500 Antisense
TCGCTTTCTGCATGCTTCAATCAGC 10 599 1528 Antisense
Sequence Source Affymetrix Proprietary Database