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[192853_at] WD domain, G-beta repeat (2 domains)

Description Y54G9A.6 /REP_DB=WormBase Gene ID /WP=CE19233 /TR=Q9XWH0 /GB=CAA21698.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat (2 domains)
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 93      6grp_total > 79      4grp_total > 57      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 410
(-3)
P 		564.6
(3)
P 		517.9
(1.2)
P 		475.5
(-0.5)
P 		155
B 384.9
(-3)
P 		557
(3)
P 		557.6
(3)
P 		391.7
(-2.8)
P 		173
C 500.5
(-0.6)
P 		555
(0.8)
P 		647.1
(3)
P 		399.9
(-3)
P 		247
avr 431.8
(-2.6) 		558.9
(2.4) 		574.2
(3) 		422.4
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 394.1
(-2.1)
P 		395.6
(-2)
P 		323.6
(-3)
P 		391.1
(-2.1)
P 		429.9
(-1.6)
P 		772.4
(3)
P 		449
B 400.2
(-1.1)
P 		328.8
(-2.2)
P 		275.8
(-3)
P 		367.9
(-1.6)
P 		598.8
(1.8)
P 		676.3
(3)
P 		401
C 507.1
(0.3)
P 		346
(-2)
P 		371.5
(-1.7)
P 		281.7
(-3)
P 		552.2
(1)
P 		687.5
(3)
P 		406
avr 433.8
(-1.3) 		356.8
(-2.5) 		323.6
(-3) 		346.9
(-2.6) 		527
(0.1) 		712.1
(3) 		389
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 149.3
(3)
P 		122.6
(1)
P 		135.4
(2)
P 		69.6
(-3)
P 		80
B 122.7
(1.3)
P 		137.6
(3)
P 		129.2
(2.1)
P 		83.5
(-3)
P 		54
C 165.7
(0.7)
P 		159.6
(0.5)
P 		225.5
(3)
P 		67.4
(-3)
P 		158
avr 145.9
(1.8) 		139.9
(1.4) 		163.4
(3) 		73.5
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 72.6
(-2.9)
P 		140.7
(0.6)
P 		70.5
(-3)
P 		99.2
(-1.5)
P 		129.7
(0)
P 		188.1
(3)
P 		118
B 139.2
(-0.7)
P 		109.4
(-1.6)
P 		67
(-3)
P 		97.4
(-2)
P 		243.3
(2.7)
P 		252.2
(3)
P 		185
C 188
(1.5)
P 		105.6
(-1.3)
P 		94.6
(-1.7)
P 		56.6
(-3)
P 		178.7
(1.2)
P 		230.1
(3)
P 		174
avr 133.3
(-0.7) 		118.6
(-1.3) 		77.4
(-3) 		84.4
(-2.7) 		183.9
(1.4) 		223.5
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3356
Sequence Type Exemplar sequence
Representative Public ID Y54G9A.6 NCBI
Target Description Y54G9A.6 /REP_DB=WormBase Gene ID /WP=CE19233 /TR=Q9XWH0 /GB=CAA21698.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064478 NCBI Caenorhabditis elegans Y54G9A.6 (Y54G9A.6) mRNA, complete cds. 11/11 A 
SNAP00000011609 ENSEMBL cdna:SNAP chromosome:CEL140:II:13725978:13729360:1 11/11 None
GENEFINDER00000011616 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13725978:13729360:1 11/11 None
Y54G9A.6 ENSEMBL cdna:known chromosome:CEL140:II:13725975:13729506:1 gene:Y54G9A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13725974-13729357(+) 100.0 100.0
Public Domain and Genome References
Gene Title WD domain, G-beta repeat (2 domains)
Ensembl Y54G9A.6
Entrez Gene 175018 Entrez gene
SwissProt Q9XWH0 EMBL-EBI
WormBase CE19233 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21698 Hypothetical protein Y54G9A.6 [Caenorhabditis elegans] ref|NP_496879.1| Y54G9A.6 [Caenorhabditis elegans] 0.0
blast CAE73278 Hypothetical protein CBG20696 [Caenorhabditis briggsae] 1.0E-179
blast CAE73279 Hypothetical protein CBG20697 [Caenorhabditis briggsae] 2.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.049
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.8E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.2E-7
Sequence
Target Sequence 
>C. ELEGANS:192853_AT
gagaagctacggaaacggcgccatcgagtcggtcaacgtgtcgagcagtgtctacgcgat
ggatgttctgaagcatacgatcctagtcggcacgaaagatcgcaaaatcttcatgtatga
tagtcggaagctccgcgagccgcttcaagtccgtgatagtccgttgaaatatcagacacg
ggcggtgcagttctttccgactggcgaagcgtttgtggtgtcgtcgatcgagggaagagt
cgctgtagagtatgtagatcagagtggagaggagatgatgaagagaaagtatgcgttcaa
atgtcatcgagagaaggatactgatggaactgagctgattcatccagttcataccgtcgc
atttcatccgaaatatggaacttttgcgacaggaggcgccgatggaattgtcaatatttg
ggatcctttcaatcggaagcgtattattcagcttcataaattcgaaacgtccatctcctc
attatccttcaacgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGCTACGGAAACGGCGCCATC 100 391 426 Antisense
GGTCAACGTGTCGAGCAGTGTCTAC 544 503 456 Antisense
GTGTCTACGCGATGGATGTTCTGAA 686 485 473 Antisense
GAAGCATACGATCCTAGTCGGCACG 527 341 495 Antisense
CCGCTTCAAGTCCGTGATAGTCCGT 110 261 565 Antisense
ATCAGACACGGGCGGTGCAGTTCTT 267 23 596 Antisense
GGCGAAGCGTTTGTGGTGTCGTCGA 547 537 628 Antisense
GAGCTGATTCATCCAGTTCATACCG 495 387 757 Antisense
TTCATACCGTCGCATTTCATCCGAA 72 689 773 Antisense
GGAACTTTTGCGACAGGAGGCGCCG 410 529 802 Antisense
TCTCCTCATTATCCTTCAACGAAGA 129 611 899 Antisense
Sequence Source Affymetrix Proprietary Database