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[192852_s_at] Zinc finger, C3HC4 type (RING finger)

Description K01G5.1 /REP_DB=WormBase Gene ID /WP=CE26718 /TR=O17917 /GB=CAB07242.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 55      6grp_highest_sub > Cu      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 411.3
(3)
P 		211.6
(-3)
P 		246.7
(-1.9)
P 		273.2
(-1.1)
P 		200
B 365.3
(3)
P 		226.7
(-3)
P 		299.2
(0.1)
P 		226.8
(-3)
P 		139
C 369.4
(3)
P 		232.5
(-3)
P 		266.9
(-1.5)
P 		243
(-2.5)
P 		137
avr 382
(3) 		223.6
(-3) 		270.9
(-1.2) 		247.7
(-2.1) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 411.7
(2.8)
P 		371.8
(0.7)
P 		341.7
(-0.8)
P 		298.5
(-3)
P 		416.3
(3)
P 		328.6
(-1.5)
P 		118
B 460.9
(2.7)
P 		345.6
(-2.3)
P 		448
(2.1)
P 		328.3
(-3)
P 		360.7
(-1.6)
P 		467.9
(3)
P 		140
C 340.2
(-1.2)
P 		321.4
(-2.3)
P 		307.6
(-3)
P 		351.7
(-0.6)
P 		315.1
(-2.6)
P 		418.1
(3)
P 		111
avr 404.3
(3) 		346.3
(-1.5) 		365.8
(0) 		326.2
(-3) 		364
(-0.1) 		404.9
(3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 149.8
(3)
P 		45.9
(-2.7)
P 		64.5
(-1.7)
P 		40
(-3)
P 		110
B 116.5
(3)
P 		56
(-2.3)
P 		69.3
(-1.2)
P 		48.3
(-3)
P 		68
C 122.3
(3)
P 		66.9
(-1.1)
P 		93
(0.8)
P 		41
(-3)
P 		81
avr 129.5
(3) 		56.3
(-2.1) 		75.6
(-0.7) 		43.1
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 75.9
(-2.8)
P 		132.2
(3)
P 		74.4
(-3)
P 		75.7
(-2.9)
P 		125.6
(2.3)
P 		80
(-2.4)
P 		58
B 160.4
(2)
P 		115
(-1.1)
P 		108.8
(-1.5)
P 		87
(-3)
P 		146.5
(1.1)
P 		174.5
(3)
P 		88
C 126.1
(1.8)
P 		98.1
(-0.6)
P 		78.3
(-2.3)
P 		70.7
(-3)
P 		102
(-0.3)
P 		140
(3)
P 		69
avr 120.8
(1.8) 		115.1
(1.2) 		87.2
(-1.9) 		77.8
(-3) 		124.7
(2.2) 		131.5
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192852_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6372
Sequence Type Exemplar sequence
Representative Public ID K01G5.1 NCBI
Target Description K01G5.1 /REP_DB=WormBase Gene ID /WP=CE26718 /TR=O17917 /GB=CAB07242.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066974 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-331) (tag-331) mRNA, complete cds. 11/11 None
GENEFINDER00000033500 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10755527:10758399:-1 11/11 None
SNAP00000033492 ENSEMBL cdna:SNAP chromosome:CEL140:III:10755575:10757514:-1 11/11 None
K01G5.1 ENSEMBL cdna:known chromosome:CEL140:III:10755502:10757519:-1 gene:K01G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10755570-10758391(-) 99.95 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Gene Symbol tag-331
Ensembl K01G5.1
Entrez Gene 176507 Entrez gene
SwissProt O17917 EMBL-EBI
WormBase CE26718 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250736_S_AT zinc finger (CCCH-type/C3HC4-type RING finger) family protein at
DROSOPHILA_2:1640177_AT dm
DROSGENOME1:154702_AT dm
CHICKEN:GGA.11596.1.S1_A_AT zinc finger protein 183 gga
MOUSE430_2:1424837_AT RIKEN cDNA 2810428C21 gene mm
MOUSE430A_2:1424837_AT RIKEN cDNA 2810428C21 gene mm
MOE430A:1424837_AT RIKEN cDNA 2810428C21 gene mm
MG-U74CV2:167363_F_AT RIKEN cDNA 2810428C21 gene mm
MG-U74CV2:170330_AT RIKEN cDNA 2810428C21 gene mm
MG-U74CV2:169661_R_AT RIKEN cDNA 2810428C21 gene (2810428C21Rik), mRNA mm
MU19KSUBB:TC26277_AT RIKEN cDNA 2810428C21 gene (2810428C21Rik), mRNA mm
RAE230A:1374906_AT similar to RIKEN cDNA 2810428C21 rn
RAT230_2:1374906_AT similar to RIKEN cDNA 2810428C21 rn
YEAST_2:1771937_AT Essential protein, component of a complex containing Cef1p; has similarity to S. pombe Cwf24p Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T23197 hypothetical protein K01G5.1 - Caenorhabditis elegans 0.0
blast CAB07242 Hypothetical protein K01G5.1 [Caenorhabditis elegans] ref|NP_499375.1| Temporarily Assigned Gene name family member (tag-331) [Caenorhabditis elegans] gb|AAG50239.1| RING and zinc finger protein [Caenorhabditis elegans] sp|O17917|ZN183_CAEEL Putative zinc finger protein 183 homolog 1.0E-164
blast T23197 hypothetical protein K01G5.1 - Caenorhabditis elegans 1.0E-164
blast AAR97528 zinc finger protein 183 [Caenorhabditis briggsae] emb|CAE71404.1| Hypothetical protein CBG18314 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.7E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.5E-12
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.4E-10
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.7E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033500 1 220-242
Sequence
Target Sequence 
>C. ELEGANS:192852_S_AT
ggagactggattctgtacgtttggagattcgtgtaaatttgtgcacgaccgatcggacta
taaacacggatgggagattgatgaggagtacgaagcaggaaaatatggtgctgaagacga
tgcgaattacgagattcatgaaggcgacgatacgtttccggaggattgttttatttgcgg
aaatccatttgttgatccgatcgtgacaaaatgcaagcactacttttgcaccggttgtgc
gttgaaatcgttccaaaagtcgtcaaaatgcccaatatgtcagcagaatactgagaatat
tatgaataccgcaaaagagctcctaacctacctgaaacggaagaagcaacaacagaagca
agaagccgagaaacaggaagaagaaaaagatagtgacgatgatgaaaaaccacacgaatg
cgacgatcaccatcatcatgatcacgaagatgagcccgaggagcctgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGACTGGATTCTGTACGTTTGGA 223 517 1266 Antisense
AATTTGTGCACGACCGATCGGACTA 204 173 1301 Antisense
GCGACGATACGTTTCCGGAGGATTG 497 287 1409 Antisense
GAAATCCATTTGTTGATCCGATCGT 595 361 1445 Antisense
CAAGCACTACTTTTGCACCGGTTGT 243 185 1479 Antisense
CCGGTTGTGCGTTGAAATCGTTCCA 285 263 1496 Antisense
GTCGTCAAAATGCCCAATATGTCAG 404 473 1524 Antisense
GAATACCGCAAAAGAGCTCCTAACC 524 323 1569 Antisense
GCTCCTAACCTACCTGAAACGGAAG 191 281 1584 Antisense
AACCACACGAATGCGACGATCACCA 335 147 1673 Antisense
GAAGATGAGCCCGAGGAGCCTGAAA 202 339 1711 Antisense
Sequence Source Affymetrix Proprietary Database