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[192851_s_at] serine/threonine protein phosphatase

Description F29F11.6 /REP_DB=WormBase Gene ID /WP=CE20735 /TR=Q27497 /GB=CAA98273.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 66      6grp_total > 04      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 22      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 836
1 2 3 4 range
A 2054.3
(3)
P 		1426.7
(-3)
P 		1518
(-2.1)
P 		1446.4
(-2.8)
P 		628
B 1913.6
(3)
P 		1633.5
(-1.5)
P 		1541.8
(-3)
P 		1571.6
(-2.5)
P 		372
C 1788.7
(2.3)
P 		1861
(3)
P 		1723.4
(1.7)
P 		1218.8
(-3)
P 		642
avr 1918.9
(3) 		1640.4
(-0.3) 		1594.4
(-0.8) 		1412.3
(-3) 		507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1268
1 2 3 4 5 6 range
A 1714.1
(2.7)
P 		1745.6
(3)
P 		1162.4
(-3)
P 		1510.4
(0.6)
P 		1438.5
(-0.2)
P 		1461.4
(0.1)
P 		583
B 1278.4
(-1.2)
P 		1545.1
(2.4)
P 		1267.4
(-1.3)
P 		1590.1
(3)
P 		1297.6
(-0.9)
P 		1140.7
(-3)
P 		449
C 2408.4
(3)
P 		1463.2
(-1.9)
P 		1752.2
(-0.4)
P 		1338.3
(-2.5)
P 		1453.2
(-1.9)
P 		1246.2
(-3)
P 		1162
avr 1800.3
(3) 		1584.6
(0.5) 		1394
(-1.7) 		1479.6
(-0.7) 		1396.4
(-1.7) 		1282.8
(-3) 		518
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 748
(3)
P 		309.7
(-1.9)
P 		396.8
(-0.9)
P 		211.7
(-3)
P 		536
B 610.2
(3)
P 		403.4
(-1.5)
P 		357.3
(-2.5)
P 		334.9
(-3)
P 		275
C 592.1
(2.9)
P 		535
(2)
P 		600.6
(3)
P 		205.5
(-3)
P 		395
avr 650.1
(3) 		416
(-0.5) 		451.6
(0) 		250.7
(-3) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 640
1 2 3 4 5 6 range
A 316
(-2)
P 		620.8
(3)
P 		253.1
(-3)
P 		383.1
(-0.9)
P 		434.1
(-0)
P 		355.8
(-1.3)
P 		368
B 444.8
(0.7)
P 		514.3
(2.6)
P 		307.8
(-3)
P 		421.2
(0.1)
P 		527.2
(3)
P 		425.4
(0.2)
P 		219
C 892.7
(3)
P 		446.5
(-1.3)
P 		446
(-1.3)
P 		269.1
(-3)
P 		470.2
(-1.1)
P 		417.2
(-1.6)
P 		624
avr 551.2
(3) 		527.2
(2.3) 		335.6
(-3) 		357.8
(-2.4) 		477.2
(0.9) 		399.5
(-1.2) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192851_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13924
Sequence Type Exemplar sequence
Representative Public ID F29F11.6 NCBI
Target Description F29F11.6 /REP_DB=WormBase Gene ID /WP=CE20735 /TR=Q27497 /GB=CAA98273.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073332 NCBI Caenorhabditis elegans yeast Glc Seven-like Phosphatases family member (gsp-1) (gsp-1) mRNA, complete cds. 11/11 None
SNAP00000022016 ENSEMBL cdna:SNAP chromosome:CEL140:V:10685113:10687492:1 10/11 None
GENEFINDER00000022018 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10685113:10688433:1 11/11 None
F29F11.6.2 ENSEMBL cdna:known chromosome:CEL140:V:10684544:10689090:1 gene:F29F11.6 11/11 None
F29F11.6.4 ENSEMBL cdna:known chromosome:CEL140:V:10685004:10689090:1 gene:F29F11.6 11/11 None
F29F11.6.3 ENSEMBL cdna:known chromosome:CEL140:V:10685006:10688819:1 gene:F29F11.6 11/11 None
F29F11.6.1 ENSEMBL cdna:known chromosome:CEL140:V:10685006:10689090:1 gene:F29F11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10685112-10688433(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Gene Symbol gsp-1
Ensembl F29F11.6
Entrez Gene 179486 Entrez gene
SwissProt Q27497 EMBL-EBI
WormBase CE20735 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247761_AT serine/threonine protein phosphatase PP1 isozyme 2 (TOPP2) at
CANINE:1582421_AT protein phosphatase 1, catalytic subunit, beta isoform cfa
CANINE_2:CFA.250.1.S1_S_AT protein phosphatase 1, catalytic subunit, beta isoform cfa
CANINE_2:CFA.250.1.S2_AT protein phosphatase 1, catalytic subunit, beta isoform cfa
DROSGENOME1:144796_AT flap wing dm
DROSOPHILA_2:1624755_A_AT flap wing dm
DROSGENOME1:143162_AT flap wing dm
CHICKEN:GGA.1250.1.S1_AT protein phosphatase 1, catalytic subunit, beta isoform gga
CHICKEN:GGA.1250.1.S2_AT protein phosphatase 1, catalytic subunit, beta isoform gga
HG-U133A:201409_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U133A_2:201409_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U133_PLUS_2:201409_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U95AV2:41244_F_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HU35KSUBC:RC_N50082_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HUGENEFL:X80910_AT protein phosphatase 1, catalytic subunit, beta isoform hs
U133_X3P:G4506004_3P_A_AT protein phosphatase 1, catalytic subunit, beta isoform hs
U133_X3P:HS.21537.0.S4_3P_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
U133_X3P:HS.21537.0.S2_3P_A_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U133A_2:201407_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-FOCUS:201407_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U133_PLUS_2:201407_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U133A:201407_S_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U133A_2:201408_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U133_PLUS_2:201408_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U133A:201408_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U95E:68234_R_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U95E:78737_AT protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U95C:53870_AT Protein phosphatase 1, catalytic subunit, beta isoform hs
HG-U95D:87471_AT Protein phosphatase 1, catalytic subunit, beta isoform hs
HU35KSUBB:RC_H30730_AT Protein phosphatase 1, catalytic subunit, beta isoform hs
MOE430A:1426205_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOUSE430A_2:1426205_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOUSE430_2:1426205_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOUSE430A_2:1456462_X_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOE430A:1456462_X_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOUSE430_2:1456462_X_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MU11KSUBA:M27073_S_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MG-U74AV2:100088_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOE430A:1433540_X_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOUSE430A_2:1433540_X_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOUSE430_2:1433540_X_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOE430A:1431328_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOUSE430A_2:1431328_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MOUSE430_2:1431328_AT protein phosphatase 1, catalytic subunit, beta isoform mm
MU19KSUBB:TC34344_I_AT Protein phosphatase 1 (dis2m2) mm
MU19KSUBC:TC35311_S_AT Protein phosphatase 1 (dis2m2) mm
MU19KSUBC:TC41108_AT Protein phosphatase 1 (dis2m2) mm
RG-U34A:S78218_G_AT protein phosphatase 1, catalytic subunit, beta isoform rn
RG-U34A:S78218_AT protein phosphatase 1, catalytic subunit, beta isoform rn
RAE230A:1386950_AT protein phosphatase 1, catalytic subunit, beta isoform rn
RAT230_2:1386950_AT protein phosphatase 1, catalytic subunit, beta isoform rn
RAE230B:1384785_AT Protein phosphatase 1, catalytic subunit, beta isoform rn
RAT230_2:1384785_AT Protein phosphatase 1, catalytic subunit, beta isoform rn
RAE230B:1390990_AT Protein phosphatase 1, catalytic subunit, beta isoform rn
RAT230_2:1390990_AT Protein phosphatase 1, catalytic subunit, beta isoform rn
RAE230B:1392730_AT Protein phosphatase 1, catalytic subunit, beta isoform rn
RAT230_2:1392730_AT Protein phosphatase 1, catalytic subunit, beta isoform rn
RG-U34C:RC_AI144948_AT Protein phosphatase 1, catalytic subunit, beta isoform rn
RG-U34C:RC_AI231149_AT Protein phosphatase 1, catalytic subunit, beta isoform rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98273 Hypothetical protein F29F11.6 [Caenorhabditis elegans] ref|NP_505733.1| yeast Glc Seven-like Phosphatases family member (gsp-1) [Caenorhabditis elegans] emb|CAE64872.1| Hypothetical protein CBG09676 [Caenorhabditis briggsae] 0.0
blast NP_001029825 hypothetical protein LOC538829 [Bos taurus] gb|AAI04629.1| MGC129042 protein [Bos taurus] ref|NP_037197.1| protein phosphatase 1, catalytic subunit, beta [Rattus norvegicus] ref|NP_996759.1| protein phosphatase 1, catalytic subunit, beta isoform 1 [Homo sapiens] ref|NP_002700.1| protein phosphatase 1, catalytic subunit, beta isoform 1 [Homo sapiens] gb|AAH62033.1| Protein phosphatase 1, catalytic subunit, beta [Rattus norvegicus] gb|AAH46832.1| Protein phosphatase 1, catalytic subunit, beta [Mus musculus] gb|AAH12045.1| Protein phosphatase 1, catalytic subunit, beta, isoform 1 [Homo sapiens] emb|CAA56870.1| protein phosphotase 1 catyltic subunit beta isoform [Homo sapiens] emb|CAA43820.1| protein phosphatase 1 [Oryctolagus cuniculus] emb|CAH92420.1| hypothetical protein [Pongo pygmaeus] gb|AAA37527.1| protein phosphatase 1 [Mus musculus] ref|NP_990453.1| protein phosphatase 1, catalytic subunit, beta isoform [Gallus gallus] dbj|BAE27684.1| unnamed protein product [Mus musculus] dbj|BAE35984.1| unnamed protein product [Mus musculus] dbj|BAE40108.1| unnamed protein product [Mus musculus] dbj|BAE38608.1| unnamed protein product [Mus musculus] dbj|BAE41126.1| unnamed protein product [Mus musculus] dbj|BAC40636.1| unnamed protein product [Mus musculus] emb|CAG47080.1| PPP1CB [Homo sapiens] emb|CAG47059.1| PPP1CB [Homo sapiens] gb|AAB34335.1| protein phosphatase 1 beta; PP1 beta [Rattus sp.] gb|AAY24124.1| unknown [Homo sapiens] ref|NP_999349.1| protein phosphatase 1, catalytic subunit, beta isoform [Sus scrofa] gb|AAX36588.1| protein phosphatase 1 catalytic subunit beta isoform [synthetic construct] gb|AAH02697.1| Protein phosphatase 1, catalytic subunit, beta, isoform 1 [Homo sapiens] gb|AAF01137.1| protein phosphatase type-1 catalytic subunit delta isoform [Homo sapiens] sp|P62142|PP1B_RAT Serine/threonine protein phosphatase PP1-beta catalytic subunit (PP-1B) sp|P62143|PP1B_RABIT Serine/threonine protein phosphatase PP1-beta catalytic subunit (PP-1B) sp|P61292|PP1B_PIG Serine/threonine protein phosphatase PP1-beta catalytic subunit (PP-1B) sp|P62207|PP1B_CHICK Serine/threonine protein phosphatase PP1-beta catalytic subunit (PP-1B) sp|P62141|PP1B_MOUSE Serine/threonine protein phosphatase PP1-beta catalytic subunit (PP-1B) sp|P62140|PP1B_HUMAN Serine/threonine protein phosphatase PP1-beta catalytic subunit (PP-1B) pir||I73630 phosphoprotein phosphatase (EC 3.1.3.16) 1-beta catalytic chain - rat gb|AAA85093.1| type-1 protein phosphatase catalytic beta-subunit dbj|BAA07203.1| Catalytic subunit of chicken gizzard type-1 delta protein phosphatase [Gallus gallus] dbj|BAA14195.1| protein phosphatase 1, catalytic subunit [Rattus norvegicus] dbj|BAA32238.1| protein phosphatase-1 delta [Sus scrofa] prf||2117365B protein phosphatase 1:ISOTYPE=beta 1.0E-177
blast AAV38548 protein phosphatase 1, catalytic subunit, beta isoform [synthetic construct] gb|AAX42771.1| protein phosphatase 1 catalytic subunit beta isoform [synthetic construct] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.9E-44
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.1E-44
Sequence
Target Sequence 
>C. ELEGANS:192851_S_AT
aaaactttcaccgattgcttcaactgtcttccaattgctgcactcattgatgagaagatc
ttctgctgtcacggaggactctccccagatctccaaaatatggaacaaattcgccgtgtg
atgcgaccaaccgatgttcctgatactggattgttgtgcgatttgctctggtctgatcca
gacaaggatgttaccggatggggagaaaatgatagaggagtctcgttcacatttggacct
gatgtcgttgcaaagtttttgaacagacatgatttggatctgatatgcagagctcatcag
gtcgtcgaagatggatatgagttctttgctaagcgacaacttgtcacactattctctgct
ccaaattattgtggagaattcgataacgctggtggaatgatgagcgttgatgagacatta
atgtgcagtttccagattctgaaaccatcggagaaaaaagcgaaatatcagtatcaagga
atgaacagtggacgaccagcagtgggcggagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTTTCACCGATTGCTTCAACT 37 131 460 Antisense
TTCAACTGTCTTCCAATTGCTGCAC 380 685 478 Antisense
CTCTCCCCAGATCTCCAAAATATGG 25 231 538 Antisense
TTCGCCGTGTGATGCGACCAACCGA 412 697 569 Antisense
GACCAACCGATGTTCCTGATACTGG 82 383 584 Antisense
GATTGTTGTGCGATTTGCTCTGGTC 402 435 608 Antisense
GAGTCTCGTTCACATTTGGACCTGA 498 399 677 Antisense
GGACCTGATGTCGTTGCAAAGTTTT 623 523 694 Antisense
TATGCAGAGCTCATCAGGTCGTCGA 10 657 743 Antisense
GACAACTTGTCACACTATTCTCTGC 533 365 794 Antisense
TGGACGACCAGCAGTGGGCGGAGGA 536 547 948 Antisense
Sequence Source Affymetrix Proprietary Database