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[192850_at] Zinc finger, C3HC4 type (RING finger)

Description B0393.6 /REP_DB=WormBase Gene ID /WP=CE00859 /TR=Q17495 /GB=CAA86059.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 98      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 91      6grp_total > 98      4grp_total > 33      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 82.1
(-3)
P 		145.3
(-0.1)
P 		214.1
(3)
P 		173.2
(1.1)
P 		132
B 70.2
(-3)
P 		170.9
(3)
P 		142.8
(1.3)
P 		167.9
(2.8)
P 		101
C 71.6
(-3)
P 		167.8
(3)
P 		124.4
(0.3)
P 		161.9
(2.6)
P 		96
avr 74.6
(-3) 		161.3
(2.6) 		160.4
(2.5) 		167.7
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 410
1 2 3 4 5 6 range
A 129.5
(-2.2)
P 		113.5
(-2.5)
P 		77.6
(-3)
P 		150.2
(-1.9)
P 		308
(0.4)
P 		487.8
(3)
P 		410
B 80.3
(-3)
P 		87
(-2.9)
P 		109.3
(-2.4)
P 		148.4
(-1.6)
P 		271.3
(1)
P 		368.2
(3)
P 		288
C 84.1
(-3)
P 		125
(-1.9)
P 		109.4
(-2.3)
P 		146
(-1.4)
P 		284.5
(2.3)
P 		312.9
(3)
P 		229
avr 98
(-3) 		108.5
(-2.8) 		98.8
(-3) 		148.2
(-2) 		287.9
(0.9) 		389.6
(3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 29.9
(-2.1)
P 		31.5
(-1.8)
P 		56
(3)
P 		25.4
(-3)
P 		31
B 22.4
(-3)
P 		42.2
(3)
P 		33.1
(0.2)
P 		35.8
(1.1)
P 		20
C 23.7
(-3)
P 		48.2
(3)
P 		43.4
(1.8)
P 		27.3
(-2.1)
P 		25
avr 25.3
(-3) 		40.6
(1.9) 		44.2
(3) 		29.5
(-1.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 23.9
(-2.6)
P 		40.4
(-1.6)
P 		16.9
(-3)
P 		38.1
(-1.8)
P 		93
(1.5)
P 		118.8
(3)
P 		102
B 27.9
(-2.9)
P 		29
(-2.9)
P 		26.5
(-3)
P 		39.3
(-2.3)
P 		110.2
(1.5)
P 		137.3
(3)
P 		111
C 31.2
(-2.7)
P 		38.1
(-2.2)
P 		27.9
(-3)
P 		29.4
(-2.9)
P 		92.1
(2)
P 		104.8
(3)
P 		77
avr 27.7
(-2.8) 		35.8
(-2.3) 		23.8
(-3) 		35.6
(-2.3) 		98.4
(1.6) 		120.3
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6007
Sequence Type Exemplar sequence
Representative Public ID B0393.6 NCBI
Target Description B0393.6 /REP_DB=WormBase Gene ID /WP=CE00859 /TR=Q17495 /GB=CAA86059.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065583(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065583 NCBI Caenorhabditis elegans B0393.6 (B0393.6) mRNA, complete cds. 10/11 None
SNAP00000037572 ENSEMBL cdna:SNAP chromosome:CEL140:III:4780401:4781943:-1 10/11 None
GENEFINDER00000037576 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4780401:4781949:-1 10/11 None
B0393.6 ENSEMBL cdna:known chromosome:CEL140:III:4780401:4781943:-1 gene:B0393.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4780368-4781943(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl B0393.6
Entrez Gene 181957 Entrez gene
SwissProt Q17495 EMBL-EBI
WormBase CE33964 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86059 Hypothetical protein B0393.6 [Caenorhabditis elegans] ref|NP_497984.2| B0393.6 [Caenorhabditis elegans] 0.0
blast CAE71132 Hypothetical protein CBG17986 [Caenorhabditis briggsae] 1.0E-136
blast CAE71132 Hypothetical protein CBG17986 [Caenorhabditis briggsae] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:192850_AT
attctcttccaaccaatgtggcaccccggatcccaccatcgtcacgctcttcattcactc
aacacagcaatgattctggagtcgtattgtcaacgccgccaacatcttcctctgcaaaaa
cagctggcctttcacccactcacaacttttctcgatcatctacatcacttcgtattccca
cgccgacaacgaagattcagaagattcagaacttctttgaaacaacgcgtgctccacgga
tcagccgaattcgaatgggcgtcacggatcttgtgaacacgtatgccccgccgacctatg
ccacatcccctgttcacatcaacaccaaacaatttgaatgctgctcggtcggagaattcg
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTCTTCCAACCAATGTGGCACC 360 11 827 Antisense
GCTCTTCATTCACTCAACACAGCAA 280 301 872 Antisense
CTGGAGTCGTATTGTCAACGCCGCC 119 241 902 Antisense
CCAACATCTTCCTCTGCAAAAACAG 25 277 925 Antisense
ACTCACAACTTTTCTCGATCATCTA 161 101 964 Antisense
TCATCTACATCACTTCGTATTCCCA 54 621 982 Antisense
TTCCCACGCCGACAACGAAGATTCA 186 687 1001 Antisense
TCTTTGAAACAACGCGTGCTCCACG 105 609 1040 Antisense
TGCTCCACGGATCAGCCGAATTCGA 318 577 1056 Antisense
GGATCTTGTGAACACGTATGCCCCG 108 513 1092 Antisense
AATGCTGCTCGGTCGGAGAATTCGG 585 165 1163 Antisense
Sequence Source Affymetrix Proprietary Database