[Home] | [Total List]

[192849_s_at]

Description F52H3.7 /REP_DB=WormBase Gene ID /WP=CE03403 /GEN=lec-2 /TR=Q20684 /GB=CAA91327.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=galactoside-binding lectin
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 27      6grp_total > 16      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4040
1 2 3 4 range
A 8712.1
(-0.4)
P 		7281.6
(-2.7)
P 		7114.8
(-3)
P 		10866.8
(3)
P 		3752
B 8291
(-2.8)
P 		8171.6
(-3)
P 		9407.5
(-0.5)
P 		11154.4
(3)
P 		2983
C 8695.6
(-1)
P 		8352.5
(-1.6)
P 		7556.9
(-3)
P 		10968.2
(3)
P 		3411
avr 8566.2
(-1.8) 		7935.2
(-3) 		8026.4
(-2.8) 		10996.5
(3) 		3061

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6084
1 2 3 4 5 6 range
A 7805.3
(-0.4)
P 		10484.1
(3)
P 		8487.5
(0.5)
P 		5716.2
(-3)
P 		6436.4
(-2.1)
P 		7948.3
(-0.2)
P 		4768
B 9006.2
(3)
P 		7400
(-0.4)
P 		6194.5
(-2.9)
P 		6236.2
(-2.8)
P 		6130.5
(-3)
P 		6599.1
(-2)
P 		2876
C 9629.9
(3)
P 		6457.6
(-0.6)
P 		7804.7
(0.9)
P 		4399.9
(-3)
P 		8328.5
(1.5)
P 		6553.7
(-0.5)
P 		5230
avr 8813.8
(3) 		8113.9
(1.8) 		7495.6
(0.6) 		5450.8
(-3) 		6965.1
(-0.3) 		7033.7
(-0.2) 		3363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1592
1 2 3 4 range
A 3172.1
(3)
P 		1580.6
(-3)
P 		1859.9
(-1.9)
P 		1590.7
(-3)
P 		1592
B 2643.9
(3)
P 		2018.2
(-3)
P 		2179.9
(-1.4)
P 		2377
(0.4)
P 		626
C 2878.5
(3)
P 		2401.4
(0.2)
P 		2633.8
(1.6)
P 		1849.4
(-3)
P 		1029
avr 2898.2
(3) 		2000.1
(-2.6) 		2224.5
(-1.2) 		1939
(-3) 		959

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2844
1 2 3 4 5 6 range
A 1438.8
(-3)
P 		3728.7
(3)
P 		1848.4
(-1.9)
P 		1449.8
(-3)
P 		1942.2
(-1.7)
P 		1935.2
(-1.7)
P 		2290
B 3133.7
(3)
P 		2463.1
(0.5)
P 		1504.2
(-3)
P 		1651.8
(-2.5)
P 		2490.7
(0.6)
P 		2460.8
(0.5)
P 		1630
C 3569.4
(3)
P 		1970.4
(-0.6)
P 		1986.4
(-0.5)
P 		884.8
(-3)
P 		2695
(1)
P 		2193.9
(-0.1)
P 		2685
avr 2714
(3) 		2720.7
(3) 		1779.7
(-1.1) 		1328.8
(-3) 		2376
(1.5) 		2196.6
(0.7) 		1392
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192849_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3689
Sequence Type Exemplar sequence
Representative Public ID F52H3.7 NCBI
Target Description F52H3.7 /REP_DB=WormBase Gene ID /WP=CE03403 /GEN=lec-2 /TR=Q20684 /GB=CAA91327.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=galactoside-binding lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027018(11), NM_063764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027018 NCBI Caenorhabditis elegans gaLECtin family member (lec-2) (lec-2) mRNA, complete cds. 11/11 None
NM_063764 NCBI Caenorhabditis elegans gaLECtin family member (lec-2) (lec-2) mRNA, complete cds. 11/11 A 
SNAP00000021621 ENSEMBL cdna:SNAP chromosome:CEL140:II:10009804:10011196:-1 11/11 None
GENEFINDER00000021633 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10009804:10016159:-1 11/11 None
F52H3.7b.2 ENSEMBL cdna:known chromosome:CEL140:II:10009517:10014650:-1 gene:F52H3.7 11/11 A 
F52H3.7b.1 ENSEMBL cdna:known chromosome:CEL140:II:10009517:10011244:-1 gene:F52H3.7 11/11 A 
F52H3.7b.3 ENSEMBL cdna:known chromosome:CEL140:II:10009520:10011246:-1 gene:F52H3.7 11/11 A 
F52H3.7a ENSEMBL cdna:known chromosome:CEL140:II:10009804:10015971:-1 gene:F52H3.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10009800-10015791(-) 100.0 100.0
Public Domain and Genome References
Ensembl F52H3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91327 Hypothetical protein F52H3.7a [Caenorhabditis elegans] ref|NP_496165.3| gaLECtin family member (lec-2) [Caenorhabditis elegans] 0.0
blast CAA91327 Hypothetical protein F52H3.7a [Caenorhabditis elegans] ref|NP_496165.3| gaLECtin family member (lec-2) [Caenorhabditis elegans] 1.0E-162
blast CAC70097 Hypothetical protein F52H3.7b [Caenorhabditis elegans] ref|NP_001022189.1| gaLECtin family member (lec-2) [Caenorhabditis elegans] dbj|BAB11968.1| galectin LEC-2 [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Sequence
Target Sequence 
>C. ELEGANS:192849_S_AT
gaagagcgcaaatcgaacccatacaagaagggagacgacattgacatccgcatccgcgcc
catgactccaagttccagatctttgttgatcagaaggaggtgaaggagtacgagcatcgt
gtgccactctcctccatcacacacttcactatcgacggagatgttcttgtcaactacatt
cactggggaggaaagtactatccagttccatatgagagtgggctcgccggagagggactt
gccccaggcaagactcttactgtctttggaattccagagaagaaggccaagagattccac
atcaatcttctcaagaagaacggagatattgctcttcatcttaacgctcgtttcgatgag
aagcacgtcgttcgcaactcgttgatcaactccgcttggggaaatgaggagcgtgaagga
aaaatgccatttgagaaggctgttggatttgatttggagatccataacgagccatacgca
ttcgctgtcaccgtgaacggagaacgtttcgcatcgtatgctcaccgtctcagtcctgat
gaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGCGCAAATCGAACCCATACA 537 337 3202 Antisense
GGAGACGACATTGACATCCGCATCC 62 519 3232 Antisense
CATGACTCCAAGTTCCAGATCTTTG 601 209 3262 Antisense
GGAGTACGAGCATCGTGTGCCACTC 46 515 3306 Antisense
GCCCCAGGCAAGACTCTTACTGTCT 600 285 3442 Antisense
GATATTGCTCTTCATCTTAACGCTC 399 427 3526 Antisense
GATGAGAAGCACGTCGTTCGCAACT 171 411 3556 Antisense
CAACTCGTTGATCAACTCCGCTTGG 237 189 3576 Antisense
GATCCATAACGAGCCATACGCATTC 86 417 3660 Antisense
GGAGAACGTTTCGCATCGTATGCTC 344 519 3700 Antisense
CTCACCGTCTCAGTCCTGATGAGGT 42 229 3722 Antisense
Sequence Source Affymetrix Proprietary Database