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[192848_s_at] Zinc finger, C3HC4 type (RING finger)

Description D2030.7 /REP_DB=WormBase Gene ID /WP=CE09084 /TR=P90792 /GB=CAA98119.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_high1_10_10 > 96      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_total > 97      4grp_total > 10      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 58.5
(-2.6)
P 		53.5
(-3)
P 		53.7
(-3)
P 		122.2
(3)
P 		69
B 56.3
(-3)
P 		72.2
(1.4)
P 		57.2
(-2.8)
P 		78
(3)
P 		22
C 71.7
(-3)
P 		71.8
(-3)
P 		77.4
(-2.3)
P 		122
(3)
P 		50
avr 62.2
(-3) 		65.8
(-2.5) 		62.8
(-2.9) 		107.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 381
1 2 3 4 5 6 range
A 47.6
(-3)
A 		56.2
(-2.8)
P 		115.2
(-1.2)
P 		155
(-0.2)
P 		198.7
(1)
P 		275
(3)
P 		227
B 34.1
(-3)
P 		65.1
(-2.4)
P 		87.6
(-2)
P 		108.1
(-1.6)
P 		235.1
(0.7)
P 		358
(3)
P 		324
C 42.2
(-3)
P 		54.1
(-2.8)
P 		102.1
(-2)
P 		142
(-1.4)
P 		209.8
(-0.3)
P 		414.7
(3)
P 		373
avr 41.3
(-3) 		58.5
(-2.7) 		101.6
(-1.8) 		135
(-1.2) 		214.5
(0.4) 		349.2
(3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 21.3
(3)
P 		11.6
(-3)
P 		14
(-1.5)
P 		17.9
(0.9)
P 		10
B 18
(3)
P 		17.8
(2.7)
P 		13.3
(-3)
P 		16.6
(1.2)
P 		5
C 23.7
(-0.1)
P 		20.6
(-3)
P 		27
(3)
P 		20.6
(-3)
P 		6
avr 21
(3) 		16.7
(-3) 		18.1
(-1) 		18.4
(-0.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 8.8
(-3)
A 		20
(-1.8)
P 		25.1
(-1.3)
P 		39.3
(0.1)
P 		60
(2.3)
P 		67
(3)
P 		58
B 11.9
(-3)
P 		21.7
(-2.5)
P 		21.3
(-2.5)
P 		28.6
(-2.2)
P 		95.5
(1.1)
P 		133.5
(3)
P 		122
C 15.6
(-3)
P 		16.5
(-3)
P 		26
(-2.5)
P 		28.5
(-2.4)
P 		67.9
(-0.5)
P 		138.8
(3)
P 		123
avr 12.1
(-3) 		19.4
(-2.6) 		24.1
(-2.3) 		32.1
(-1.8) 		74.5
(0.7) 		113.1
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192848_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.745
Sequence Type Exemplar sequence
Representative Public ID D2030.7 NCBI
Target Description D2030.7 /REP_DB=WormBase Gene ID /WP=CE09084 /TR=P90792 /GB=CAA98119.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059721 NCBI Caenorhabditis elegans D2030.7 (D2030.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000031292 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7596849:7599301:1 11/11 None
D2030.7.2 ENSEMBL cdna:known chromosome:CEL140:I:7596780:7598836:1 gene:D2030.7 11/11 A 
D2030.7.1 ENSEMBL cdna:known chromosome:CEL140:I:7596780:7598692:1 gene:D2030.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031277 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7596779-7598473(+) 99.12 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl D2030.7
Entrez Gene 172516 Entrez gene
SwissProt P90792 EMBL-EBI
WormBase CE30270 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98119 Hypothetical protein D2030.7 [Caenorhabditis elegans] ref|NP_492122.2| D2030.7 [Caenorhabditis elegans] 0.0
blast CAD36485 Hypothetical protein D2030.11 [Caenorhabditis elegans] ref|NP_740890.1| D2030.11 [Caenorhabditis elegans] 2.0E-69
Sequence
Target Sequence 
>C. ELEGANS:192848_S_AT
ctctgtcgcacgcttcaaatgcagctcttgcgagagaaaattttgggacattcgctcagg
aactcaacacttgaaggctcataatgaagacggagcagggaattccattagtcatattct
tccagaaatttccgaagaacatctctccaaatttatcaatgttgcgaatcagtgttaccc
ggaaacatttcgtaatactcaatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTGTCGCACGCTTCAAATGCAGC 110 233 1104 Antisense
CTTCAAATGCAGCTCTTGCGAGAGA 662 221 1116 Antisense
GAGAAAATTTTGGGACATTCGCTCA 673 389 1137 Antisense
GGACATTCGCTCAGGAACTCAACAC 643 523 1149 Antisense
GGAACTCAACACTTGAAGGCTCATA 312 529 1162 Antisense
GACGGAGCAGGGAATTCCATTAGTC 293 377 1192 Antisense
ATTCCATTAGTCATATTCTTCCAGA 569 7 1205 Antisense
GAAATTTCCGAAGAACATCTCTCCA 139 363 1228 Antisense
AGAACATCTCTCCAAATTTATCAAT 559 73 1239 Antisense
GTTGCGAATCAGTGTTACCCGGAAA 655 439 1264 Antisense
GAAACATTTCGTAATACTCAATCTG 15 357 1285 Antisense
Sequence Source Affymetrix Proprietary Database