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[192847_at] Zinc finger, C3HC4 type (RING finger)

Description D2030.7 /REP_DB=WormBase Gene ID /WP=CE09084 /TR=P90792 /GB=CAA98119.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 23      6grp_total > 97      4grp_total > 24      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 82.6
(-3)
P 		88.1
(-2.7)
P 		141.4
(0.2)
P 		193.3
(3)
P 		111
B 62.6
(-3)
A 		65.1
(-2.9)
A 		156.9
(1.6)
P 		185
(3)
P 		122
C 69.2
(-3)
P 		104.8
(-0.6)
P 		131.5
(1.1)
P 		159.4
(3)
P 		90
avr 71.5
(-3) 		86
(-2.2) 		143.3
(1) 		179.2
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 720
1 2 3 4 5 6 range
A 70.2
(-3)
A 		126.9
(-2.4)
P 		205.4
(-1.6)
P 		317.9
(-0.4)
P 		459.6
(1.1)
P 		633.7
(3)
P 		564
B 91.9
(-3)
A 		116.3
(-2.8)
P 		186.2
(-2.1)
P 		210.6
(-1.8)
P 		546
(1.4)
P 		710
(3)
P 		618
C 71.5
(-3)
P 		108.1
(-2.7)
P 		232.7
(-1.7)
P 		236.9
(-1.6)
P 		468.5
(0.3)
P 		790.1
(3)
P 		719
avr 77.9
(-3) 		117.1
(-2.6) 		208.1
(-1.8) 		255.1
(-1.3) 		491.4
(0.9) 		711.3
(3) 		633
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 30.1
(0.7)
P 		19.1
(-3)
P 		37
(3)
P 		28.3
(0.1)
P 		18
B 20
(-2)
A 		16.1
(-3)
A 		36.3
(2.2)
P 		39.4
(3)
P 		23
C 22.9
(-3)
P 		30.1
(-1.1)
P 		45.8
(3)
P 		26.9
(-2)
P 		23
avr 24.3
(-2.2) 		21.8
(-3) 		39.7
(3) 		31.5
(0.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 12.9
(-3)
A 		45.1
(-1.6)
P 		44.7
(-1.7)
P 		80.6
(-0.1)
P 		138.7
(2.3)
P 		154.3
(3)
P 		141
B 32
(-3)
A 		38.7
(-2.8)
P 		45.2
(-2.7)
P 		55.8
(-2.4)
P 		221.8
(1.9)
P 		264.8
(3)
P 		233
C 26.5
(-3)
P 		33
(-2.8)
P 		59.2
(-2.2)
P 		47.6
(-2.5)
P 		151.6
(0.2)
P 		264.5
(3)
P 		238
avr 23.8
(-3) 		38.9
(-2.6) 		49.7
(-2.2) 		61.3
(-1.9) 		170.7
(1.3) 		227.9
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.745
Sequence Type Exemplar sequence
Representative Public ID D2030.7 NCBI
Target Description D2030.7 /REP_DB=WormBase Gene ID /WP=CE09084 /TR=P90792 /GB=CAA98119.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059721(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059721 NCBI Caenorhabditis elegans D2030.7 (D2030.7) mRNA, complete cds. 10/11 A 
SNAP00000031277 ENSEMBL cdna:SNAP chromosome:CEL140:I:7596849:7598356:1 10/11 None
GENEFINDER00000031292 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7596849:7599301:1 10/11 None
D2030.7.2 ENSEMBL cdna:known chromosome:CEL140:I:7596780:7598836:1 gene:D2030.7 10/11 A 
D2030.7.1 ENSEMBL cdna:known chromosome:CEL140:I:7596780:7598692:1 gene:D2030.7 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7596779-7598473(+) 99.12 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl D2030.7
Entrez Gene 172516 Entrez gene
SwissProt P90792 EMBL-EBI
WormBase CE30270 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98119 Hypothetical protein D2030.7 [Caenorhabditis elegans] ref|NP_492122.2| D2030.7 [Caenorhabditis elegans] 0.0
blast CAD36485 Hypothetical protein D2030.11 [Caenorhabditis elegans] ref|NP_740890.1| D2030.11 [Caenorhabditis elegans] 2.0E-69
Sequence
Target Sequence 
>C. ELEGANS:192847_AT
aacatcttcttcgtctatcagcaaagaacttggtgactctggcagctcgaagttctctga
tgttgctgacaatcatactgcatcccttaatctttcaatgttatctcaacgttcaacagt
gacttcatcatcaatttcccagtctattccaactccacgtggaagggataccccaagtgc
cgcgaagagagccaaattttccgacgttgaaatgtgccgaatttgttgggacgtaacatt
cttcactacacttgaagaatattgcaatcacgttcaagatcgtcactgctctgtcgcacg
cttcaaatgcagctcttgcgagagaaaattttgggacattcgctcaggaactcaacactt
gaaggctcataatgaagacggagcagggaattccattagtcatattcttccagaaatttc
cgaagaacatctctccaaatttatcaatgttgcgaatcagtgttacccggaaacatttcg
taatactcaatctgaaaagattttggacatcgtaagtcgggcatcattttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATCTTCTTCGTCTATCAGCAAA 693 137 816 Antisense
ACTTGGTGACTCTGGCAGCTCGAAG 286 99 843 Antisense
GCAGCTCGAAGTTCTCTGATGTTGC 473 313 857 Antisense
TCATACTGCATCCCTTAATCTTTCA 102 621 888 Antisense
GTGACTTCATCATCAATTTCCCAGT 340 483 934 Antisense
ATCAATTTCCCAGTCTATTCCAACT 207 27 945 Antisense
GTGGAAGGGATACCCCAAGTGCCGC 98 489 974 Antisense
GAGAGCCAAATTTTCCGACGTTGAA 479 373 1002 Antisense
GTTGGGACGTAACATTCTTCACTAC 303 437 1040 Antisense
ACGTTCAAGATCGTCACTGCTCTGT 105 95 1085 Antisense
ACATCGTAAGTCGGGCATCATTTTG 191 107 1322 Antisense
Sequence Source Affymetrix Proprietary Database