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[192845_at]

Description ZK1086.1 /REP_DB=WormBase Gene ID /WP=CE06680 /TR=Q23395 /GB=CAA94223.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YHG1 like
Cluster 6grp_total > 60      4grp_total > 06      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 48.7
(1.6)
P 		4.3
(-3)
A 		50.6
(1.8)
P 		62
(3)
P 		58
B 74.8
(3)
P 		37.1
(-3)
A 		38.9
(-2.7)
A 		49.7
(-1)
P 		38
C 43
(-2.3)
P 		64.5
(0.3)
M 		37.3
(-3)
A 		86.1
(3)
P 		49
avr 55.5
(1) 		35.3
(-3) 		42.3
(-1.6) 		65.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 49.3
(0.6)
A 		34
(-1.6)
A 		65.5
(3)
M 		64.2
(2.8)
P 		24.8
(-3)
A 		61.2
(2.4)
P 		41
B 40.5
(1.5)
A 		44.4
(3)
P 		38.2
(0.6)
A 		35.2
(-0.6)
A 		29
(-3)
A 		35.8
(-0.4)
M 		15
C 38.2
(-2)
A 		40.9
(-0.9)
A 		47.6
(1.6)
A 		51.4
(3)
A 		47.7
(1.6)
A 		35.4
(-3)
P 		16
avr 42.7
(0.2) 		39.8
(-0.8) 		50.4
(3) 		50.3
(3) 		33.8
(-3) 		44.1
(0.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 17.7
(3)
P 		0.9
(-3)
A 		13.2
(1.4)
P 		9.1
(-0.1)
P 		17
B 23.9
(3)
P 		9.2
(-2.9)
A 		9
(-3)
A 		10.6
(-2.4)
P 		15
C 14.2
(-1.7)
P 		18.5
(3)
M 		13
(-3)
A 		14.5
(-1.4)
P 		6
avr 18.6
(3) 		9.5
(-3) 		11.7
(-1.5) 		11.4
(-1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.1
(-1.9)
A 		12.1
(0.1)
A 		14.3
(1.6)
M 		16.3
(3)
P 		7.5
(-3)
A 		14.9
(2)
P 		9
B 14.1
(2.2)
A 		14.8
(3)
P 		9.3
(-3)
A 		9.3
(-3)
A 		11.8
(-0.3)
A 		13.3
(1.4)
M 		6
C 14.2
(1.6)
A 		12.5
(-0.4)
A 		12.1
(-0.9)
A 		10.3
(-3)
A 		15.4
(3)
A 		11.8
(-1.2)
P 		5
avr 12.5
(0.2) 		13.1
(2.3) 		11.9
(-1.9) 		12
(-1.6) 		11.6
(-3) 		13.3
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17323
Sequence Type Exemplar sequence
Representative Public ID ZK1086.1 NCBI
Target Description ZK1086.1 /REP_DB=WormBase Gene ID /WP=CE06680 /TR=Q23395 /GB=CAA94223.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YHG1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171794, NM_171795
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171795 NCBI Caenorhabditis elegans Oxysterol Binding protein (OSBP) Related family member (obr-3) (obr-3) mRNA, complete cds. A 
NM_171794 NCBI Caenorhabditis elegans Oxysterol Binding protein (OSBP) Related family member (obr-3) (obr-3) mRNA, complete cds. A 
SNAP00000043455 ENSEMBL cdna:SNAP chromosome:CEL140:X:13798560:13803135:-1 None
ZK1086.1a ENSEMBL cdna:known chromosome:CEL140:X:13798145:13809778:-1 gene:ZK1086.1 None
GENEFINDER00000043459 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13798646:13803018:-1 None
ZK1086.1b ENSEMBL cdna:known chromosome:CEL140:X:13798560:13803492:-1 gene:ZK1086.1 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13798559-13802934(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1086.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44120 Hypothetical protein ZK1086.1a [Caenorhabditis elegans] emb|CAA94223.2| Hypothetical protein ZK1086.1a [Caenorhabditis elegans] ref|NP_741923.1| Oxysterol Binding protein (OSBP) Related family member (obr-3) [Caenorhabditis elegans] 0.0
blast CAD44161 Hypothetical protein ZK1086.1b [Caenorhabditis elegans] ref|NP_741924.1| Oxysterol Binding protein (OSBP) Related family member (obr-3) [Caenorhabditis elegans] 0.0
blast CAE63081 Hypothetical protein CBG07370 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 3.3E-61
Pfam IPR001849 EMBL-EBI Pleckstrin-like 7.2E-13
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 3.3E-61
Pfam IPR001849 EMBL-EBI Pleckstrin-like 7.2E-13
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 3.3E-61
Pfam IPR001849 EMBL-EBI Pleckstrin-like 7.2E-13
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 3.3E-61
Pfam IPR001849 EMBL-EBI Pleckstrin-like 7.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741923.1 1 707-729
NP_741924.1 1 744-766
ZK1086.1a 1 707-729
ZK1086.1b 1 744-766
SNAP00000043455 1 704-726
Sequence
Target Sequence 
>C. ELEGANS:192845_AT
tatgtgtacattcatgccgactaccgcccatgggacaacaacaacgatattcaacaaatt
gagaacaactacgtggtaaaaacgatttcgaggcactccaaaaggaaaacgggaaacagt
gaacagttgggcagtgacaatacatcagaggccagtgaaagcgatgaagaagtgattgag
ccaaaaattaagaagaaggaaattgtcccagcgaagtcaaaaccaatcacaccggaggtc
gctgatgagcgtatcaaggtaggtatattgatgataaatttggtcatttgtttaattgtg
ggttttttaaatctcagtagcaaaagaaaaaataatacagctcgaattaagtacagaata
gaaaaaatcaaagaaataggatcccttatgcttacaaaaagtagtggaagaattattatt
ttggcgtggacagcggaaatggagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTGTACATTCATGCCGACTACC 81 657 1672 Antisense
ACCGCCCATGGGACAACAACAACGA 305 75 1694 Antisense
AAACGATTTCGAGGCACTCCAAAAG 686 125 1751 Antisense
GGGAAACAGTGAACAGTTGGGCAGT 541 491 1782 Antisense
CAGTTGGGCAGTGACAATACATCAG 707 135 1795 Antisense
ATGAGCGTATCAAGGTAGGTATATT 224 43 1916 Antisense
TGGTCATTTGTTTAATTGTGGGTTT 69 553 1952 Antisense
GTGGGTTTTTTAAATCTCAGTAGCA 577 481 1969 Antisense
AATAGGATCCCTTATGCTTACAAAA 99 173 2046 Antisense
GAATTATTATTTTGGCGTGGACAGC 263 325 2081 Antisense
TGGCGTGGACAGCGGAAATGGAGCG 271 541 2093 Antisense
Sequence Source Affymetrix Proprietary Database