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[192842_at]

Description F23A7.6 /REP_DB=WormBase Gene ID /WP=CE26811 /TR=Q93558 /GB=CAB02979.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 70      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 5.1
(-3)
A 		12
(-0.8)
A 		8
(-2.1)
A 		24.2
(3)
A 		19
B 12.2
(0.8)
A 		5.1
(-3)
A 		6.2
(-2.4)
A 		16.2
(3)
A 		11
C 14.4
(-1.3)
A 		13.5
(-1.5)
A 		7.3
(-3)
A 		32.9
(3)
A 		26
avr 10.6
(-1.8) 		10.2
(-2) 		7.2
(-3) 		24.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 7.9
(-3)
A 		15.2
(2.9)
A 		15.3
(3)
A 		12.2
(0.5)
A 		8.4
(-2.6)
A 		9.4
(-1.8)
A 		7
B 13.7
(0.7)
A 		12.3
(-0.3)
A 		13.5
(0.6)
A 		11.2
(-1.1)
A 		8.6
(-3)
A 		16.8
(3)
A 		8
C 5.4
(-2.9)
A 		14.5
(-1.4)
A 		13.2
(-1.6)
A 		42.1
(3)
A 		8.1
(-2.4)
A 		4.6
(-3)
A 		38
avr 9
(-2.7) 		14
(-0.5) 		14
(-0.5) 		21.8
(3) 		8.4
(-3) 		10.3
(-2.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.8
(-3)
A 		2.6
(-0.2)
A 		2.1
(-1.9)
A 		3.5
(3)
A 		2
B 3.9
(3)
A 		1.3
(-3)
A 		1.4
(-2.8)
A 		3.4
(1.8)
A 		3
C 4.8
(1.6)
A 		3.9
(-0.2)
A 		2.5
(-3)
A 		5.5
(3)
A 		3
avr 3.5
(1.3) 		2.6
(-1.3) 		2
(-3) 		4.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.5
(-3)
A 		5.4
(3)
A 		3.3
(-0.2)
A 		3.1
(-0.5)
A 		2.5
(-1.5)
A 		2.3
(-1.8)
A 		4
B 4.8
(0.3)
A 		4.1
(-1)
A 		3.3
(-2.5)
A 		3
(-3)
A 		3.5
(-2.1)
A 		6.3
(3)
A 		3
C 2
(-2.6)
A 		4.4
(-0.5)
A 		3.3
(-1.5)
A 		8.5
(3)
A 		2.6
(-2.1)
A 		1.5
(-3)
A 		7
avr 2.8
(-3) 		4.6
(2.1) 		3.3
(-1.6) 		4.9
(3) 		2.9
(-2.7) 		3.4
(-1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192842_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17891
Sequence Type Exemplar sequence
Representative Public ID F23A7.6 NCBI
Target Description F23A7.6 /REP_DB=WormBase Gene ID /WP=CE26811 /TR=Q93558 /GB=CAB02979.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078244
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000042976 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16237188:16242701:-1 11/11 None
SNAP00000042971 ENSEMBL cdna:SNAP chromosome:CEL140:X:16237367:16237936:-1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16237366-16240609(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02979 Hypothetical protein F23A7.6 [Caenorhabditis elegans] ref|NP_510645.1| F23A7.6 [Caenorhabditis elegans] 1.0E-104
blast CAB04703 Hypothetical protein T06G6.5 [Caenorhabditis elegans] ref|NP_493224.1| T06G6.5 [Caenorhabditis elegans] 5.0E-36
blast CAB81993 Hypothetical protein Y71A12B.8 [Caenorhabditis elegans] ref|NP_493433.1| Y71A12B.8 [Caenorhabditis elegans] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:192842_AT
gtcggagagatcagtcttcctcatcgtcgatgcccaggaagcaatacaacaaactctcat
ctcaagggcaaagttgatgatgtctacgcgagctaccgtgatgagttagatcactgtacc
aactatggaaaaattaatgctggcctatctgagaagctgaagaaccgagctaaaaagatc
gctgaacaggagaagctgattgaaaaactgaaagtggagcacattcgggccttcaaccac
agctacagcaagtggacaaaccgccggctcaaccaatatcgtacttgtttttattgctgc
aaaagatatgacgaggtcgaggtcgttgttcgtgtgaccgaatgtggtcactccggatgc
aaaacttgtttcgataagatgctgattgaagaccatcacggaaagtatctcaaatgtcca
gagtgccgtctctgctcggttaactatgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGAGAGATCAGTCTTCCTCATC 203 473 1072 Antisense
ACAACAAACTCTCATCTCAAGGGCA 246 113 1117 Antisense
GTTGATGATGTCTACGCGAGCTACC 306 437 1144 Antisense
AATGCTGGCCTATCTGAGAAGCTGA 702 165 1207 Antisense
CCTTCAACCACAGCTACAGCAAGTG 455 269 1301 Antisense
ACAGCAAGTGGACAAACCGCCGGCT 633 107 1316 Antisense
CCGGCTCAACCAATATCGTACTTGT 288 263 1335 Antisense
AGGTCGAGGTCGTTGTTCGTGTGAC 222 57 1385 Antisense
ATGTGGTCACTCCGGATGCAAAACT 358 49 1413 Antisense
AAATGTCCAGAGTGCCGTCTCTGCT 276 121 1483 Antisense
CCGTCTCTGCTCGGTTAACTATGAG 449 265 1497 Antisense
Sequence Source Affymetrix Proprietary Database