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[192840_s_at]

Description B0302.1 /REP_DB=WormBase Gene ID /WP=CE03866 /CHR=X /FEA=Sanger Annotation /DEF=locus:kin-25 protein tyrosine kinase (ST.LOUIS) SW:Q10925 protein_id:AAA82367.1
Cluster 6grp_high1_10_10 > 48      4grp_high_8_8 > 21      6grp_total > 38      4grp_total > 09      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 133.8
(-3)
P 		162.5
(-2.1)
P 		174.3
(-1.7)
M 		324.3
(3)
P 		191
B 143
(-3)
P 		182.1
(-1.2)
A 		190.1
(-0.8)
A 		271.8
(3)
P 		129
C 124.3
(-2.5)
P 		111.6
(-3)
A 		136.1
(-1.9)
P 		250.2
(3)
P 		139
avr 133.7
(-3) 		152.1
(-2.3) 		166.8
(-1.7) 		282.1
(3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 236.5
(3)
P 		131.1
(-2.7)
P 		142.9
(-2.1)
P 		131.3
(-2.7)
P 		126.5
(-3)
P 		182.7
(0.1)
P 		110
B 232.9
(3)
P 		141
(-0.7)
P 		82.8
(-3)
P 		120.2
(-1.5)
P 		120.5
(-1.5)
P 		193.6
(1.4)
P 		150
C 219
(3)
P 		159.2
(0.8)
P 		105.9
(-1.1)
P 		52.9
(-3)
A 		162
(0.9)
P 		218.4
(3)
P 		166
avr 229.5
(3) 		143.8
(-1) 		110.5
(-2.6) 		101.5
(-3) 		136.3
(-1.4) 		198.2
(1.5) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 48.7
(3)
P 		35.3
(-3)
P 		45.6
(1.6)
M 		47.5
(2.5)
P 		13
B 45.6
(-2.3)
P 		45
(-2.6)
A 		44.1
(-3)
A 		57.9
(3)
P 		14
C 41.1
(0.5)
P 		32.1
(-3)
A 		47.4
(3)
P 		42.2
(1)
P 		15
avr 45.1
(0.9) 		37.5
(-3) 		45.7
(1.2) 		49.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 43.6
(1.8)
P 		46.6
(3)
P 		31.1
(-3)
P 		33.3
(-2.1)
P 		38.2
(-0.3)
P 		44.5
(2.2)
P 		16
B 81
(3)
P 		46.9
(-0.4)
P 		20.1
(-3)
P 		31.8
(-1.8)
P 		49
(-0.2)
P 		72.2
(2.1)
P 		61
C 81.2
(3)
P 		48.6
(0.2)
P 		27
(-1.6)
P 		10.6
(-3)
A 		52.4
(0.6)
P 		73.1
(2.3)
P 		71
avr 68.6
(3) 		47.4
(0.1) 		26.1
(-2.9) 		25.2
(-3) 		46.5
(-0.1) 		63.3
(2.3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192840_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17797
Sequence Type Exemplar sequence
Representative Public ID B0302.1 NCBI
Target Description B0302.1 /REP_DB=WormBase Gene ID /WP=CE03866 /CHR=X /FEA=Sanger Annotation /DEF=locus:kin-25 protein tyrosine kinase (ST.LOUIS) SW:Q10925 protein_id:AAA82367.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078382(11), NM_078383(11), NM_182445(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078382 NCBI Caenorhabditis elegans protein KINase family member (kin-25) (kin-25) mRNA, complete cds. 11/11 None
NM_078383 NCBI Caenorhabditis elegans protein KINase family member (kin-25) (kin-25) mRNA, complete cds. 11/11 None
NM_182445 NCBI Caenorhabditis elegans protein KINase family member (kin-25) (kin-25) mRNA, complete cds. 10/11 None
GENEFINDER00000034061 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17186300:17192885:1 11/11 None
SNAP00000034059 ENSEMBL cdna:SNAP chromosome:CEL140:X:17190206:17192885:1 11/11 None
B0302.1a ENSEMBL cdna:known chromosome:CEL140:X:17186292:17193200:1 gene:B0302.1 11/11 None
B0302.1c ENSEMBL cdna:known chromosome:CEL140:X:17186300:17192885:1 gene:B0302.1 10/11 None
B0302.1b ENSEMBL cdna:known chromosome:CEL140:X:17186300:17192885:1 gene:B0302.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17186299-17192885(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0302.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO44917 Protein kinase protein 25, isoform a [Caenorhabditis elegans] ref|NP_510783.2| protein KINase family member (kin-25) [Caenorhabditis elegans] sp|Q10925|KIN25_CAEEL Probable tyrosine-protein kinase kin-25 0.0
blast AAO44918 Protein kinase protein 25, isoform b [Caenorhabditis elegans] ref|NP_510784.2| protein KINase family member (kin-25) [Caenorhabditis elegans] 0.0
blast CAE69694 Hypothetical protein CBG15949 [Caenorhabditis briggsae] 0.0
blast AAQ62460 Protein kinase protein 25, isoform c [Caenorhabditis elegans] ref|NP_872245.2| protein KINase family member (kin-25) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.1.112) (p150) (c-ABL) 9.0E-69
ec ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.1.112) (p150) (c-ABL) 4.0E-71
hanks 2.1.14 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-K 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.9E-71
Sequence
Target Sequence 
>C. ELEGANS:192840_S_AT
tttaacattaccaactccagcaacgggtaccctcagttaaatggatatccaaactatgga
aacggttttcaggcgtatggttatggaatgaactatcatcaaggatatcctggatatcaa
ggatacaattcatatggcaacggaatggggcagcttgcactgacccacaacgccgtcact
tctttgccaccgttggttccatcagagaacagattctccggaacagcccaaccacttggc
gagtctgacattatggagtttttgggaacacagcaacgtcaagcgggttcttcatcgcga
gcagttccacctgcatctgcatccacgtcagcagcttctggaatcacggatttgagtatg
gcagataagatggaggtgttgtatagagaagctgattttacgcataaaggaaattgtgat
accatggtttctcagtgcaacggaaacaccgaacaggcgttgaagcttctcaaacaacaa
cacttggtggatatggaacttgcaatgtcaacggagaccgcccgacaagcactcgaggcc
agacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAACATTACCAACTCCAGCAACG 54 673 3100 Antisense
TCCAGCAACGGGTACCCTCAGTTAA 19 585 3115 Antisense
ACGGAATGGGGCAGCTTGCACTGAC 382 95 3239 Antisense
GCCACCGTTGGTTCCATCAGAGAAC 106 279 3285 Antisense
CAACCACTTGGCGAGTCTGACATTA 158 187 3328 Antisense
GTCAAGCGGGTTCTTCATCGCGAGC 307 463 3377 Antisense
CCACGTCAGCAGCTTCTGGAATCAC 514 273 3422 Antisense
GATACCATGGTTTCTCAGTGCAACG 95 425 3517 Antisense
ACCGAACAGGCGTTGAAGCTTCTCA 597 87 3547 Antisense
TGCAATGTCAACGGAGACCGCCCGA 276 575 3600 Antisense
CGACAAGCACTCGAGGCCAGACAGT 294 253 3622 Antisense
Sequence Source Affymetrix Proprietary Database