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[192838_s_at] 3-chlorobenzoate-3,4-dioxygenase like

Description C12D8.5 /REP_DB=WormBase Gene ID /WP=CE05269 /TR=Q17938 /GB=CAA98235.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=3-chlorobenzoate-3,4-dioxygenase like
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 40      6grp_highest_nonorm > 71      6grp_total > 52      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 224
(3)
P 		192.6
(1.9)
P 		172.9
(1.3)
P 		45.3
(-3)
A 		179
B 251.7
(3)
P 		203.5
(1.7)
P 		174.5
(0.9)
P 		30.2
(-3)
A 		222
C 208.1
(3)
P 		149.4
(0.9)
P 		155.8
(1.1)
P 		39.6
(-3)
A 		169
avr 227.9
(3) 		181.8
(1.5) 		167.7
(1.1) 		38.4
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 252.3
(-1.2)
P 		234.9
(-1.4)
P 		583.8
(3)
P 		379.1
(0.4)
P 		192.2
(-1.9)
P 		107.8
(-3)
P 		476
B 213.4
(-2)
P 		217.5
(-2)
P 		577.3
(3)
P 		390.2
(0.4)
P 		180.9
(-2.5)
P 		142.6
(-3)
P 		435
C 216.3
(-1.5)
P 		235.3
(-1.2)
P 		504.5
(3)
P 		414.2
(1.6)
P 		122.3
(-3)
P 		169.9
(-2.3)
P 		382
avr 227.3
(-1.7) 		229.2
(-1.7) 		555.2
(3) 		394.5
(0.7) 		165.1
(-2.6) 		140.1
(-3) 		415
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 81.5
(3)
P 		41.8
(-0.2)
P 		45.2
(0.1)
P 		6.6
(-3)
A 		75
B 80.3
(3)
P 		50.3
(0.6)
P 		40.4
(-0.2)
P 		6.4
(-3)
A 		74
C 68.9
(3)
P 		42.9
(0.5)
P 		54.3
(1.6)
P 		6.7
(-3)
A 		62
avr 76.9
(3) 		45
(0.3) 		46.6
(0.4) 		6.6
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 46.5
(-1.8)
P 		83.5
(0.4)
P 		127.1
(3)
P 		96.1
(1.2)
P 		58
(-1.1)
P 		26.2
(-3)
P 		101
B 74.3
(-1.5)
P 		72.4
(-1.7)
P 		140.2
(3)
P 		103.3
(0.5)
P 		73.5
(-1.6)
P 		53.2
(-3)
P 		87
C 80.2
(-0.3)
P 		71.8
(-0.8)
P 		128.4
(3)
P 		83.3
(-0)
P 		39.6
(-3)
P 		56.9
(-1.8)
P 		89
avr 67
(-1.5) 		75.9
(-0.9) 		131.9
(3) 		94.2
(0.4) 		57
(-2.2) 		45.4
(-3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192838_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12176
Sequence Type Exemplar sequence
Representative Public ID C12D8.5 NCBI
Target Description C12D8.5 /REP_DB=WormBase Gene ID /WP=CE05269 /TR=Q17938 /GB=CAA98235.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=3-chlorobenzoate-3,4-dioxygenase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073228 NCBI Caenorhabditis elegans C12D8.5 (C12D8.5) mRNA, complete cds. 11/11 None
SNAP00000020996 ENSEMBL cdna:SNAP chromosome:CEL140:V:10226136:10228239:-1 11/11 None
GENEFINDER00000021016 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10226136:10230010:-1 11/11 None
C12D8.5 ENSEMBL cdna:known chromosome:CEL140:V:10226136:10228302:-1 gene:C12D8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10226135-10228239(-) 97.33 100.0
Public Domain and Genome References
Gene Title 3-chlorobenzoate-3,4-dioxygenase like
Ensembl C12D8.5
Entrez Gene 179422 Entrez gene
SwissProt Q17938 EMBL-EBI
WormBase CE34156 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.5585.1.S1_AT similar to Hypothetical protein CBG09553 gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98235 Hypothetical protein C12D8.5 [Caenorhabditis elegans] ref|NP_505629.2| C12D8.5 [Caenorhabditis elegans] 0.0
blast CAE64763 Hypothetical protein CBG09553 [Caenorhabditis briggsae] 0.0
blast AAH75979 Zgc:92275 [Danio rerio] ref|NP_001002612.1| hypothetical protein LOC436885 [Danio rerio] 8.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR005806 EMBL-EBI Rieske [2Fe-2S] domain 3.6E-23
Pfam IPR005806 EMBL-EBI Rieske [2Fe-2S] domain 3.6E-23
Pfam IPR001534 EMBL-EBI Transthyretin-like 7.6E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505629.2 1 7-29
C12D8.5 1 7-29
SNAP00000020996 1 7-29
GENEFINDER00000021016 1 93-115
Sequence
Target Sequence 
>C. ELEGANS:192838_S_AT
agaacggagcagacattgcacatctgaattatcttcacaaatcggctccacctgttacca
aaggatcagatattataaaaacagatctatcagatccccagccagctgttcaacatgttt
gggatggaaaatgggaagtgaaatcagaggaggatagacattgtggagttatgcatttga
atcaatttatgactttttggggatataaagttccattaaccagcagtaaacttgttgcag
agcagcatggtcctggaattgtccacatgttgtttgattttggaatttgggggaaaggag
tcgtatttcaaacagtaactcccgaagaagcacttctccagagagttcgattcagaatat
tttcaaatattccatggttctttgtgaaattcttcatgacagtggaagcaatgcaatttg
aacgagatgtgtttatttggtccaacaaaaagtatataaaatctccattgctggtaaaga
acgatggaccgattcagaaacatcgaagatggttttctcaattctacacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACGGAGCAGACATTGCACATCT 621 73 839 Antisense
GAATTATCTTCACAAATCGGCTCCA 232 325 864 Antisense
GGCTCCACCTGTTACCAAAGGATCA 538 539 882 Antisense
AACAGATCTATCAGATCCCCAGCCA 386 135 918 Antisense
GTTCCATTAACCAGCAGTAAACTTG 123 441 1048 Antisense
GTTGCAGAGCAGCATGGTCCTGGAA 188 435 1072 Antisense
GGTCCTGGAATTGTCCACATGTTGT 298 501 1087 Antisense
GTCGTATTTCAAACAGTAACTCCCG 29 473 1138 Antisense
GTAACTCCCGAAGAAGCACTTCTCC 115 459 1153 Antisense
GCACTTCTCCAGAGAGTTCGATTCA 57 315 1168 Antisense
GATGGTTTTCTCAATTCTACACGGA 392 407 1346 Antisense
Sequence Source Affymetrix Proprietary Database