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[192836_at] Zinc finger, C3HC4 type (RING finger)

Description Y6D1A.2 /REP_DB=WormBase Gene ID /WP=CE21323 /TR=Q9U1S9 /GB=CAB60579.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_high1_10_10 > 10      6grp_total > 23      4grp_total > 57      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 12
(-1.8)
A 		34.4
(3)
P 		28.6
(1.7)
A 		6.6
(-3)
A 		28
B 20.1
(-0.8)
A 		26.4
(0.1)
A 		45.1
(3)
A 		6.1
(-3)
A 		39
C 29.1
(-1.9)
A 		31.1
(-0.8)
M 		27.1
(-3)
A 		37.8
(3)
A 		11
avr 20.4
(-1.7) 		30.6
(1.9) 		33.6
(3) 		16.8
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 117.5
(3)
P 		57.5
(-0.2)
P 		56.8
(-0.2)
P 		62.3
(0.1)
P 		44.4
(-0.9)
P 		4.4
(-3)
A 		113
B 49.3
(-0.7)
M 		45.4
(-1.1)
P 		88.1
(3)
P 		83.3
(2.5)
P 		24.9
(-3)
A 		29.7
(-2.5)
P 		63
C 56.1
(2)
P 		63.7
(3)
P 		42.6
(0.3)
A 		54.5
(1.8)
A 		16.5
(-3)
A 		23.6
(-2.1)
A 		47
avr 74.3
(3) 		55.5
(1) 		62.5
(1.7) 		66.7
(2.2) 		28.6
(-2) 		19.2
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.4
(0.1)
A 		7.5
(3)
P 		7.5
(3)
A 		1
(-3)
A 		7
B 6.4
(0.4)
A 		6.5
(0.4)
A 		10.4
(3)
A 		1.3
(-3)
A 		9
C 9.6
(3)
A 		8.9
(1.7)
M 		9.4
(2.6)
A 		6.4
(-3)
A 		3
avr 6.8
(0.8) 		7.6
(1.5) 		9.1
(3) 		2.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 21.7
(3)
P 		20.5
(2.7)
P 		12.4
(0.3)
P 		15.8
(1.3)
P 		13.4
(0.6)
P 		1.1
(-3)
A 		21
B 17.1
(0.5)
M 		15.1
(-0.5)
P 		21.4
(2.7)
P 		22.1
(3)
P 		10.1
(-3)
A 		11.1
(-2.5)
P 		12
C 20.8
(3)
P 		19.4
(2.5)
P 		10.9
(-0.8)
A 		11
(-0.8)
A 		5.3
(-3)
A 		7.9
(-2)
A 		16
avr 19.9
(3) 		18.3
(2.3) 		14.9
(0.7) 		16.3
(1.4) 		9.6
(-1.7) 		6.7
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3070
Sequence Type Exemplar sequence
Representative Public ID Y6D1A.2 NCBI
Target Description Y6D1A.2 /REP_DB=WormBase Gene ID /WP=CE21323 /TR=Q9U1S9 /GB=CAB60579.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064124(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064124 NCBI Caenorhabditis elegans Y6D1A.2 (Y6D1A.2) mRNA, complete cds. 11/11 A 
Y6D1A.2 ENSEMBL cdna:known chromosome:CEL140:II:11817459:11819753:-1 gene:Y6D1A.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024142 8/11 Cross Hyb Matching Probes None
GENEFINDER00000024145 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11817455-11819649(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl Y6D1A.2
Entrez Gene 174817 Entrez gene
SwissProt Q9U1S9 EMBL-EBI
WormBase CE21323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60579 Hypothetical protein Y6D1A.2 [Caenorhabditis elegans] ref|NP_496525.1| Y6D1A.2 [Caenorhabditis elegans] 1.0E-153
blast CAE73383 Hypothetical protein CBG20823 [Caenorhabditis briggsae] 6.0E-23
blast CAE73399 Hypothetical protein CBG20840 [Caenorhabditis briggsae] 4.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.4E-6
Sequence
Target Sequence 
>C. ELEGANS:192836_AT
taaatcaatcgctaacggaaagtttgagaaatataagtgcaaatgttagacatcgagtgg
acgccgatagcttcaaaattgagctgaaaagagaagcgatggaaaaattccacattcgag
tggagttgttggctcaatgtgcaaaagtgaaggaattggagagggataaattccaattga
gctatcaaatgcaggaattgagaactattggagagcatcaaaatctgataaagatggttg
atgaagaacgcgagagagcggatgttcagagaaaaagagcattggagcaggtcgcgttgg
ctctgaaaaaggaagaagaatccgatggacaaccgaaaccttggaggatgtgtgagattt
gtagtcgggagtatgaggatactaaggagcgtgtgccaagggttcttgactgcgggcaca
caatttgccacgaatgcatcacgagaatccataagccaacggaaccattcaaatgtcctt
ttgatagaaaaatcattgagatggacggccggaatgtggagagctttccgaaaaattata
ctattcttcaaatggttactcattctataaatctatacacacaaagctttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATCAATCGCTAACGGAAAGTTT 589 627 209 Antisense
AATGTTAGACATCGAGTGGACGCCG 612 149 250 Antisense
GAGTGGACGCCGATAGCTTCAAAAT 586 399 263 Antisense
GGAGTTGTTGGCTCAATGTGCAAAA 267 517 330 Antisense
GAGAGGGATAAATTCCAATTGAGCT 652 395 367 Antisense
CGCGAGAGAGCGGATGTTCAGAGAA 652 253 457 Antisense
AGAGCATTGGAGCAGGTCGCGTTGG 696 69 484 Antisense
TTGGAGCAGGTCGCGTTGGCTCTGA 10 707 490 Antisense
ACTATTCTTCAAATGGTTACTCATT 211 103 748 Antisense
GGTTACTCATTCTATAAATCTATAC 287 507 762 Antisense
AAATCTATACACACAAAGCTTTTTC 466 117 777 Antisense
Sequence Source Affymetrix Proprietary Database