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[192830_s_at] Zinc finger, C3HC4 type (RING finger)

Description T01C3.3 /REP_DB=WormBase Gene ID /WP=CE12912 /TR=Q22055 /GB=CAB01659.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 88      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 5.8
(-3)
A 		27.3
(-1.7)
A 		35.9
(-1.1)
A 		102.8
(3)
A 		97
B 38.1
(-1.4)
A 		18.7
(-3)
A 		31.9
(-1.9)
A 		89.4
(3)
P 		71
C 6.5
(-3)
A 		17.4
(-2.4)
A 		44.8
(-1)
A 		121.1
(3)
P 		115
avr 16.8
(-3) 		21.1
(-2.7) 		37.5
(-1.6) 		104.4
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1645
1 2 3 4 5 6 range
A 78.9
(-2.7)
A 		11.5
(-3)
A 		14
(-3)
A 		147.6
(-2.5)
P 		1041.4
(0.8)
P 		1628.3
(3)
P 		1617
B 13.2
(-3)
A 		3.5
(-3)
A 		60.1
(-2.8)
A 		171
(-2.4)
P 		1039.5
(0.8)
P 		1634.8
(3)
P 		1631
C 11.3
(-3)
A 		57.5
(-2.8)
A 		70.6
(-2.8)
A 		169.7
(-2.4)
P 		943.4
(0.4)
P 		1648.1
(3)
P 		1637
avr 34.5
(-3) 		24.2
(-3) 		48.2
(-2.9) 		162.8
(-2.5) 		1008.1
(0.7) 		1637.1
(3) 		1613
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.1
(-3)
A 		5.9
(-1.2)
A 		9.4
(0.4)
A 		15.1
(3)
A 		13
B 12.1
(0.1)
A 		4.6
(-3)
A 		7.4
(-1.8)
A 		19.1
(3)
P 		15
C 2.1
(-3)
A 		5
(-2)
A 		15.6
(1.4)
A 		20.4
(3)
P 		18
avr 5.4
(-2.9) 		5.2
(-3) 		10.8
(-0.4) 		18.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 14.5
(-2.8)
A 		4.1
(-3)
A 		3
(-3)
A 		37.4
(-2.5)
P 		314.3
(1.7)
P 		396.4
(3)
P 		393
B 4.6
(-3)
A 		1.2
(-3)
A 		14.6
(-2.9)
A 		45.3
(-2.6)
P 		422.3
(1.2)
P 		609.6
(3)
P 		608
C 4.2
(-3)
A 		17.5
(-2.9)
A 		18
(-2.8)
A 		34.1
(-2.7)
P 		305.3
(0.3)
P 		551.7
(3)
P 		548
avr 7.8
(-3) 		7.6
(-3) 		11.9
(-2.9) 		38.9
(-2.6) 		347.3
(1) 		519.2
(3) 		512
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192830_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13825
Sequence Type Exemplar sequence
Representative Public ID T01C3.3 NCBI
Target Description T01C3.3 /REP_DB=WormBase Gene ID /WP=CE12912 /TR=Q22055 /GB=CAB01659.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074286 NCBI Caenorhabditis elegans T01C3.3 (T01C3.3) mRNA, complete cds. 11/11 None
SNAP00000022410 ENSEMBL cdna:SNAP chromosome:CEL140:V:14994471:14995258:-1 11/11 None
GENEFINDER00000022426 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14994471:14995258:-1 11/11 None
T01C3.3 ENSEMBL cdna:known chromosome:CEL140:V:14994326:14995263:-1 gene:T01C3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14994470-14995174(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl T01C3.3
Entrez Gene 179997 Entrez gene
SwissProt Q22055 EMBL-EBI
WormBase CE12912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01659 Hypothetical protein T01C3.3 [Caenorhabditis elegans] ref|NP_506687.1| T01C3.3 [Caenorhabditis elegans] 1.0E-102
blast CAA16351 Hypothetical protein Y45F10B.8 [Caenorhabditis elegans] ref|NP_502615.1| Y45F10B.8 [Caenorhabditis elegans] 8.0E-15
blast CAA16350 Hypothetical protein Y45F10B.9 [Caenorhabditis elegans] ref|NP_502624.1| Y45F10B.9 [Caenorhabditis elegans] 1.0E-14
blast CAA16351 Hypothetical protein Y45F10B.8 [Caenorhabditis elegans] ref|NP_502615.1| Y45F10B.8 [Caenorhabditis elegans] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:192830_S_AT
ccagcgcctgtctgtcagaggaagcattcagtcaaatatgtcgagcaggacggatggaat
tcttcaacgaagactagatgagacggagagaaagttggccaaaacttcagccgaactcaa
ggccaaagatgagaagttgaagaaggagacggcaagtcttgaagccagtcgtgaggctca
tcgattattgcaagaagaatcgaacaagtcgaaggtgtctgtgatgcgccttacgttcaa
gctcaatcgcatcacacatgaatctgtgaaagagcaggctgttctgaagaagaagcttct
ggactgcgagacccgactcgctacatattccgagtgcctcgtctgctaccagaagtttga
cgagaacacaagaattccacgtgtcatggactgtggacatactctgtgcgacttctgcat
caatcagattgtcaagatggcgggttgctacagcgcaacatgcccttttgaccgtgtgcg
catttttggatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCGCCTGTCTGTCAGAGGAAGC 277 273 75 Antisense
GTTGGCCAAAACTTCAGCCGAACTC 451 435 168 Antisense
GAAGGTGTCTGTGATGCGCCTTACG 451 335 285 Antisense
GTTCAAGCTCAATCGCATCACACAT 515 445 309 Antisense
GAAGAAGCTTCTGGACTGCGAGACC 75 341 363 Antisense
GCGAGACCCGACTCGCTACATATTC 156 291 380 Antisense
TACATATTCCGAGTGCCTCGTCTGC 198 645 396 Antisense
GACTGTGGACATACTCTGTGCGACT 66 377 463 Antisense
ACTCTGTGCGACTTCTGCATCAATC 379 99 475 Antisense
GGGTTGCTACAGCGCAACATGCCCT 543 495 516 Antisense
GACCGTGTGCGCATTTTTGGATTTG 331 383 544 Antisense
Sequence Source Affymetrix Proprietary Database