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[192829_at] serine/threonine protein phosphatase

Description F23B12.1 /REP_DB=WormBase Gene ID /WP=CE09593 /TR=Q27495 /GB=CAB01164.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 99      4grp_total > 62      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 72.6
(3)
A 		13.5
(-3)
A 		21.1
(-2.2)
A 		19.4
(-2.4)
A 		59
B 51.1
(0.5)
A 		12.2
(-3)
A 		79.3
(3)
A 		33.3
(-1.1)
A 		67
C 22.3
(-2.4)
A 		61.7
(3)
A 		53.1
(1.8)
A 		17.7
(-3)
A 		44
avr 48.7
(2.5) 		29.1
(-1.8) 		51.2
(3) 		23.5
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 54.8
(-2.5)
A 		42.5
(-2.9)
A 		43.4
(-2.8)
A 		38.2
(-3)
A 		223.2
(3)
A 		191
(2)
A 		185
B 9.7
(-2.9)
A 		9.3
(-2.9)
A 		6
(-3)
A 		44.6
(-1.8)
A 		192.9
(2.7)
A 		204.3
(3)
A 		198
C 5.8
(-3)
A 		7
(-3)
A 		19.3
(-2.7)
A 		15.7
(-2.8)
A 		283.6
(3)
A 		184.1
(0.9)
A 		278
avr 23.4
(-2.9) 		19.6
(-3) 		22.9
(-2.9) 		32.8
(-2.6) 		233.2
(3) 		193.1
(1.9) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26.4
(3)
A 		2.9
(-3)
A 		5.5
(-2.3)
A 		2.8
(-3)
A 		24
B 16.3
(2.2)
A 		3
(-3)
A 		18.4
(3)
A 		7.1
(-1.4)
A 		15
C 7.4
(-1.3)
A 		17.7
(2.7)
A 		18.5
(3)
A 		3
(-3)
A 		16
avr 16.7
(3) 		7.9
(-1.3) 		14.1
(1.7) 		4.3
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 10.1
(-2.9)
A 		15.1
(-2.4)
A 		9.5
(-3)
A 		9.7
(-3)
A 		67.3
(3)
A 		46.5
(0.8)
A 		58
B 3.4
(-2.9)
A 		3.1
(-2.9)
A 		1.5
(-3)
A 		11.8
(-2.2)
A 		78.4
(3)
A 		76.2
(2.8)
A 		77
C 2.2
(-3)
A 		2.1
(-3)
A 		4.9
(-2.8)
A 		3.2
(-2.9)
A 		91.8
(3)
A 		61.6
(1)
A 		90
avr 5.2
(-3) 		6.8
(-2.9) 		5.3
(-3) 		8.2
(-2.8) 		79.2
(3) 		61.4
(1.6) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14294
Sequence Type Exemplar sequence
Representative Public ID F23B12.1 NCBI
Target Description F23B12.1 /REP_DB=WormBase Gene ID /WP=CE09593 /TR=Q27495 /GB=CAB01164.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074173 NCBI Caenorhabditis elegans F23B12.1 (F23B12.1) mRNA, complete cds. 11/11 None
SNAP00000025799 ENSEMBL cdna:SNAP chromosome:CEL140:V:14431785:14432962:1 9/11 None
GENEFINDER00000025816 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14431785:14433088:1 11/11 None
F23B12.1 ENSEMBL cdna:known chromosome:CEL140:V:14431641:14433088:1 gene:F23B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14431640-14433088(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ensembl F23B12.1
Entrez Gene 184887 Entrez gene
SwissProt Q27495 EMBL-EBI
WormBase CE09593 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01164 Hypothetical protein F23B12.1 [Caenorhabditis elegans] ref|NP_506574.1| F23B12.1 [Caenorhabditis elegans] 0.0
blast AAB00704 Hypothetical protein C34D4.2 [Caenorhabditis elegans] ref|NP_501125.1| C34D4.2 [Caenorhabditis elegans] 1.0E-141
blast CAE67810 Hypothetical protein CBG13388 [Caenorhabditis briggsae] 1.0E-140
blast CAE67810 Hypothetical protein CBG13388 [Caenorhabditis briggsae] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.9E-41
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.9E-41
Sequence
Target Sequence 
>C. ELEGANS:192829_AT
gcaagaagcgctactcagtcgccttgtatgatgcatttcaacttgcattcaattgtatgc
cactgtgcgctgtcgtgagcaagaagatcatatgtatgcatggaggaatatctgaagatc
tgattgacttgacacaactcgaaaagattgatcgtccatttgatattccggacattggcg
tcatctccgacttgacctgggctgatcccgacgagaaggtcttcggatatgccgattctc
cacgtggcgcgggacgttctttcggtccgaatgcggtcaagaagttccttcaaatgcaca
acctggatctagtcgttcgtgcccatcaggtcgtcatggatggttatgaattctttgcgg
accgccaacttgtcacagtcttctcggcaccatcatactgcggacaattcgacaatgctg
ctgccgtgatgaatgttgacgacaaattgctctgtactttcacaatcttccgcccggatt
tgaaagttggcgacttcaagaagaaggacaagttaggctcgaatcacgcgcgcctgcttc
tcgaccttaaaaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGAAGCGCTACTCAGTCGCCTT 16 321 632 Antisense
CAATTGTATGCCACTGTGCGCTGTC 653 179 681 Antisense
TTCCGGACATTGGCGTCATCTCCGA 287 699 797 Antisense
GGCTGATCCCGACGAGAAGGTCTTC 392 539 831 Antisense
GTCTTCGGATATGCCGATTCTCCAC 206 469 850 Antisense
GCACAACCTGGATCTAGTCGTTCGT 344 317 927 Antisense
TCTTTGCGGACCGCCAACTTGTCAC 411 613 983 Antisense
AATTCGACAATGCTGCTGCCGTGAT 672 177 1037 Antisense
TTCACAATCTTCCGCCCGGATTTGA 278 685 1090 Antisense
GACAAGTTAGGCTCGAATCACGCGC 395 365 1138 Antisense
GCCTGCTTCTCGACCTTAAAAATGC 158 283 1163 Antisense
Sequence Source Affymetrix Proprietary Database