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[192828_s_at] ribosomal protein L10 (QM protein)

Description F10B5.1 /REP_DB=WormBase Gene ID /WP=CE01543 /TR=SW:Q09533 /GB=CAA88308.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ribosomal protein L10 (QM protein)
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 08      6grp_total > 52      4grp_total > 09      6grp_highest_sub > 03      6grp_cgc > 91      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18131
1 2 3 4 range
A 20536.5
(-3)
P 		22765.3
(-2.2)
P 		23037.5
(-2.1)
P 		37550.3
(3)
P 		17014
B 21042.5
(-3)
P 		22701.7
(-1.7)
P 		25002.6
(0.2)
P 		28581.3
(3)
P 		7539
C 19419.1
(-3)
P 		20986.1
(-2.5)
P 		20109.4
(-2.8)
P 		36592.6
(3)
P 		17174
avr 20332.7
(-3) 		22151
(-2.2) 		22716.5
(-2) 		34241.4
(3) 		13909

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7795
1 2 3 4 5 6 range
A 19765.8
(0.4)
P 		17237.7
(-1.6)
P 		23110.4
(3)
P 		18742.1
(-0.4)
P 		15489.8
(-3)
P 		17608.6
(-1.3)
P 		7621
B 17866.4
(0.2)
P 		18098.4
(0.7)
P 		19173.9
(3)
P 		17139.3
(-1.4)
P 		17423.8
(-0.8)
P 		16409.4
(-3)
P 		2765
C 15315
(-3)
P 		18252.6
(1.4)
P 		19293.2
(3)
P 		18064.6
(1.1)
P 		17680.1
(0.6)
P 		16193.9
(-1.7)
P 		3978
avr 17649.1
(-1.6) 		17862.9
(-1.2) 		20525.8
(3) 		17982
(-1) 		16864.6
(-2.8) 		16737.3
(-3) 		3789
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2536
1 2 3 4 range
A 7477.4
(3)
P 		4941.7
(-3)
P 		6022.5
(-0.4)
P 		5496.6
(-1.7)
P 		2536
B 6710.3
(3)
P 		5606.8
(-3)
P 		5793.7
(-2)
P 		6090.7
(-0.4)
P 		1104
C 6428.3
(-0.6)
P 		6033.6
(-3)
P 		7008.7
(3)
P 		6170.1
(-2.2)
P 		975
avr 6872
(3) 		5527.4
(-3) 		6275
(0.3) 		5919.1
(-1.3) 		1345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3446
1 2 3 4 5 6 range
A 3643.7
(-3)
P 		6130.6
(3)
P 		5033
(0.4)
P 		4753.4
(-0.3)
P 		4674.1
(-0.5)
P 		4287.1
(-1.4)
P 		2487
B 6216.6
(1)
P 		6024.2
(0.5)
P 		4656
(-2.7)
P 		4539.6
(-3)
P 		7079.1
(3)
P 		6119
(0.7)
P 		2540
C 5676.6
(2.9)
P 		5569.4
(2.6)
P 		4910.5
(0.7)
P 		3632.8
(-3)
P 		5721
(3)
P 		5421
(2.1)
P 		2088
avr 5179
(0.3) 		5908.1
(3) 		4866.5
(-0.9) 		4308.6
(-3) 		5824.7
(2.7) 		5275.7
(0.6) 		1600
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192828_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3012
Sequence Type Exemplar sequence
Representative Public ID F10B5.1 NCBI
Target Description F10B5.1 /REP_DB=WormBase Gene ID /WP=CE01543 /TR=SW:Q09533 /GB=CAA88308.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ribosomal protein L10 (QM protein)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063306 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-10) (rpl-10) mRNA, complete cds. 11/11 A 
SNAP00000014812 ENSEMBL cdna:SNAP chromosome:CEL140:II:8143805:8144543:1 11/11 None
GENEFINDER00000014822 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8143805:8144543:1 11/11 None
F10B5.1.2 ENSEMBL cdna:known chromosome:CEL140:II:8143796:8144593:1 gene:F10B5.1 11/11 A 
F10B5.1.3 ENSEMBL cdna:known chromosome:CEL140:II:8143800:8144593:1 gene:F10B5.1 11/11 A 
F10B5.1.1 ENSEMBL cdna:known chromosome:CEL140:II:8143802:8144593:1 gene:F10B5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8143801-8144540(+) 100.0 100.0
Public Domain and Genome References
Gene Title ribosomal protein L10 (QM protein)
Gene Symbol rpl-10
Ensembl F10B5.1
Entrez Gene 174311 Entrez gene
SwissProt Q09533 EMBL-EBI
WormBase CE01543 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261490_AT 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor protein-related at
ATGENOME1:16982_AT 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor protein-related at
CANINE:1602561_AT similar to ribosomal protein L10 cfa
CANINE:1595324_S_AT similar to ribosomal protein L10 cfa
CANINE:1592990_S_AT similar to ribosomal protein L10 cfa
CANINE:1589781_X_AT similar to ribosomal protein L10 cfa
CANINE_2:CFAAFFX.29897.1.S1_S_AT similar to ribosomal protein L10 cfa
HG-U133_PLUS_2:221989_AT ribosomal protein L10 hs
HG-U133A_2:221989_AT ribosomal protein L10 hs
HG-FOCUS:221989_AT ribosomal protein L10 hs
HG-U133A:221989_AT ribosomal protein L10 hs
HG-U133_PLUS_2:200725_X_AT ribosomal protein L10 hs
HG-U133A:200725_X_AT ribosomal protein L10 hs
HG-U133A_2:200725_X_AT ribosomal protein L10 hs
HG-U133A:200724_AT ribosomal protein L10 hs
HG-U133_PLUS_2:200724_AT ribosomal protein L10 hs
HG-U133A_2:200724_AT ribosomal protein L10 hs
HU35KSUBA:RC_AA447153_AT ribosomal protein L10 hs
HU35KSUBB:RC_AA070742_AT ribosomal protein L10 hs
HG-U95AV2:2016_S_AT ribosomal protein L10 hs
HC-G110:2016_S_AT ribosomal protein L10 hs
U133_X3P:G5174430_3P_X_AT ribosomal protein L10 hs
U133_X3P:G13097176_3P_AT ribosomal protein L10 hs
U133_X3P:HS.29797.4.A1_3P_AT ribosomal protein L10 hs
HG-U95B:47953_AT ribosomal protein L10 hs
HG-U95E:91064_S_AT ribosomal protein L10 hs
U133_X3P:HS2.435775.1.S1_3P_X_AT Ribosomal protein L10 hs
U133_X3P:1569188_3P_S_AT Ribosomal protein L10 hs
HG-U133_PLUS_2:1569188_S_AT Ribosomal protein L10 hs
MOE430A:1448157_S_AT ribosomal protein 10 mm
MOUSE430A_2:1448157_S_AT ribosomal protein 10 mm
MOUSE430_2:1448157_S_AT ribosomal protein 10 mm
MOE430A:1415942_AT ribosomal protein 10 mm
MOUSE430_2:1415942_AT ribosomal protein 10 mm
MOUSE430A_2:1415942_AT ribosomal protein 10 mm
MU11KSUBA:M93980_F_AT ribosomal protein 10 mm
MU11KSUBB:MSA.9808.0_F_AT ribosomal protein 10 mm
MU11KSUBB:MSA.21558.0_S_AT ribosomal protein 10 mm
MG-U74AV2:98342_AT ribosomal protein 10 mm
MG-U74AV2:161657_F_AT ribosomal protein 10 mm
MU11KSUBB:MSA.30848.0_S_AT Ribosomal protein 10, mRNA (cDNA clone MGC:25363 IMAGE:4224016) mm
MU11KSUBB:MSA.40207.0_F_AT Ribosomal protein 10, mRNA (cDNA clone MGC:25363 IMAGE:4224016) mm
MU11KSUBB:MSA.8982.0_AT Ribosomal protein 10, mRNA (cDNA clone MGC:25363 IMAGE:4224016) mm
MU19KSUBA:TC15720_AT Ribosomal protein 10, mRNA (cDNA clone MGC:25363 IMAGE:4224016) mm
MU19KSUBA:TC15721_AT Ribosomal protein 10, mRNA (cDNA clone MGC:25363 IMAGE:4224016) mm
MU19KSUBC:TC39464_F_AT Ribosomal protein 10, mRNA (cDNA clone MGC:25363 IMAGE:4224016) mm
MU19KSUBC:TC39465_AT Ribosomal protein 10, mRNA (cDNA clone MGC:25363 IMAGE:4224016) mm
MU19KSUBC:TC39466_AT Ribosomal protein 10, mRNA (cDNA clone MGC:25363 IMAGE:4224016) mm
RG-U34A:RC_AA945611_AT ribosomal protein L10 rn
RAE230A:1367625_AT Similar to ribosomal protein L10 rn
RAT230_2:1367625_AT Similar to ribosomal protein L10 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88308 Hypothetical protein F10B5.1 [Caenorhabditis elegans] ref|NP_495707.1| Ribosomal Protein, Large subunit family member (rpl-10) [Caenorhabditis elegans] sp|Q09533|RL10_CAEEL 60S ribosomal protein L10 (QM protein homolog) 1.0E-125
blast CAE57733 Hypothetical protein CBG00744 [Caenorhabditis briggsae] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR001197 EMBL-EBI Ribosomal protein L10E 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192828_S_AT
atcaaggaaggaaacgtcaagcacgctattgaagccttccgtcgtgccaagttcaagttc
ccaggacgtcaaatcatcgtctcttcccgcaagtggggattcaccaagtgggatcgcgaa
gactacgagcgcatgcgtgctgaaggaagactccgctccgacggagttggagttcaactc
caacgtgagcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAGGAAGGAAACGTCAAGCACG 544 25 430 Antisense
TCGTGCCAAGTTCAAGTTCCCAGGA 193 605 471 Antisense
AAGTTCCCAGGACGTCAAATCATCG 604 155 484 Antisense
CAGGACGTCAAATCATCGTCTCTTC 164 209 491 Antisense
TCGTCTCTTCCCGCAAGTGGGGATT 442 605 506 Antisense
GGGGATTCACCAAGTGGGATCGCGA 469 497 524 Antisense
GGGATCGCGAAGACTACGAGCGCAT 173 497 539 Antisense
GACTACGAGCGCATGCGTGCTGAAG 531 369 550 Antisense
GCGTGCTGAAGGAAGACTCCGCTCC 572 291 564 Antisense
GAAGACTCCGCTCCGACGGAGTTGG 472 339 575 Antisense
GGAGTTCAACTCCAACGTGAGCATG 619 517 598 Antisense
Sequence Source Affymetrix Proprietary Database