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[192826_s_at]

Description F32H2.1B /REP_DB=WormBase Gene ID /WP=CE17749 /TR=O62208 /GB=CAB04248.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Myb DNA-binding proteins (2 domains)
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 31      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 373.5
(2.5)
P 		226.6
(-3)
P 		262.7
(-1.7)
P 		387.5
(3)
P 		161
B 442.2
(3)
P 		207.9
(-3)
P 		250.3
(-1.9)
P 		282.5
(-1.1)
P 		234
C 381.1
(3)
P 		215.5
(-3)
P 		258.3
(-1.4)
P 		268.5
(-1.1)
P 		166
avr 398.9
(3) 		216.7
(-3) 		257.1
(-1.7) 		312.8
(0.2) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 396.6
(-1.9)
P 		359
(-2.6)
P 		339.9
(-3)
P 		424.8
(-1.4)
P 		476.6
(-0.4)
P 		656.2
(3)
P 		316
B 393
(-1.9)
P 		420.9
(-1.2)
P 		428.8
(-1)
P 		349.7
(-3)
P 		407.1
(-1.6)
P 		588.2
(3)
P 		239
C 228
(-3)
P 		414
(-0.6)
P 		441.1
(-0.2)
P 		429.7
(-0.4)
P 		355.3
(-1.3)
P 		686.5
(3)
P 		459
avr 339.2
(-3) 		398
(-1.8) 		403.3
(-1.7) 		401.4
(-1.8) 		413
(-1.5) 		643.6
(3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 136
(3)
P 		49.2
(-3)
P 		68.7
(-1.7)
P 		56.7
(-2.5)
P 		87
B 141
(3)
P 		51.4
(-3)
P 		58
(-2.6)
P 		60.2
(-2.4)
P 		90
C 126.2
(3)
P 		61.9
(-1.8)
P 		90
(0.3)
P 		45.3
(-3)
P 		81
avr 134.4
(3) 		54.2
(-3) 		72.2
(-1.6) 		54.1
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 73.1
(-3)
P 		127.7
(0.8)
P 		74
(-2.9)
P 		107.7
(-0.6)
P 		143.8
(1.9)
P 		159.8
(3)
P 		87
B 136.7
(-0.9)
P 		140.1
(-0.8)
P 		104.1
(-2.5)
P 		92.6
(-3)
P 		165.4
(0.4)
P 		219.3
(3)
P 		127
C 84.5
(-3)
P 		126.3
(-1.3)
P 		112.3
(-1.9)
P 		86.4
(-2.9)
P 		115
(-1.7)
P 		229.8
(3)
P 		145
avr 98.1
(-2.9) 		131.4
(-1) 		96.8
(-2.9) 		95.6
(-3) 		141.4
(-0.4) 		203
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192826_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2103
Sequence Type Exemplar sequence
Representative Public ID F32H2.1B NCBI
Target Description F32H2.1B /REP_DB=WormBase Gene ID /WP=CE17749 /TR=O62208 /GB=CAB04248.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Myb DNA-binding proteins (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060010(11), NM_060011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060010 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-11) (gei-11) mRNA, complete cds. 11/11 None
NM_060011 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-11) (gei-11) mRNA, complete cds. 11/11 None
SNAP00000013727 ENSEMBL cdna:SNAP chromosome:CEL140:I:8970489:8974047:1 11/11 None
GENEFINDER00000013775 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8970489:8974047:1 11/11 None
F32H2.1a ENSEMBL cdna:known chromosome:CEL140:I:8970446:8974186:1 gene:F32H2.1 11/11 None
F32H2.1b ENSEMBL cdna:known chromosome:CEL140:I:8970474:8974242:1 gene:F32H2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8970404-8973978(+) 100.0 100.0
Public Domain and Genome References
Ensembl F32H2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04241 Hypothetical protein F32H2.1a [Caenorhabditis elegans] ref|NP_492411.1| GEX Interacting protein family member (gei-11) [Caenorhabditis elegans] 0.0
blast CAB04248 Hypothetical protein F32H2.1b [Caenorhabditis elegans] ref|NP_492412.1| GEX Interacting protein family member (gei-11) [Caenorhabditis elegans] 0.0
blast CAE67003 Hypothetical protein CBG12402 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Myb All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb 1.0000000116861E-7
scop a.4.1.Myb All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb 2.00000002337219E-7
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 9.6E-11
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 9.1E-13
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 7.5E-10
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 9.6E-11
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 9.1E-13
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 7.5E-10
Sequence
Target Sequence 
>C. ELEGANS:192826_S_AT
gtctttctgctgaacacttttaccctcttgatgtctctctggctcaacaattcaacttca
aaaacgacgagagagagggcctcgacggagacagacgtatgcatatcgggttgtctgatg
aggtcaccaatagtaaagagtatgcgaatttttatgctcgaatgcgttcgattcttctcg
aaccaatgcgtcttggaattgctcgtgaatcgtcgtctgatgaaaccaagcggcttgtgc
gctgtcttgcagaggaacgcgcctgcgatgaagaacaacaagttacctgtgaccaaataa
gacgacgccggatgcctgatgacgagatctatgttactccaacttcaatctctagagaac
taaataacggcatgaaaatcgataccaccgagttgttggctaatctggacaagaattctg
cgaagaaaatcagaatgaaaaggaagattggagagaccgttgcgacagttgcagcgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTTCTGCTGAACACTTTTACCC 565 467 2222 Antisense
TGTCTCTCTGGCTCAACAATTCAAC 120 559 2253 Antisense
TCGGGTTGTCTGATGAGGTCACCAA 55 607 2327 Antisense
CGATTCTTCTCGAACCAATGCGTCT 176 249 2390 Antisense
AATGCGTCTTGGAATTGCTCGTGAA 348 167 2406 Antisense
AAACCAAGCGGCTTGTGCGCTGTCT 394 125 2444 Antisense
GTCTTGCAGAGGAACGCGCCTGCGA 127 469 2465 Antisense
AATAAGACGACGCCGGATGCCTGAT 565 171 2517 Antisense
TGTTACTCCAACTTCAATCTCTAGA 519 561 2553 Antisense
GATACCACCGAGTTGTTGGCTAATC 130 425 2602 Antisense
GACCGTTGCGACAGTTGCAGCGCGT 325 381 2676 Antisense
Sequence Source Affymetrix Proprietary Database