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[192825_at] Yeast hypothetical protein YIK6 like

Description F38H4.10 /REP_DB=WormBase Gene ID /WP=CE10076 /TR=Q20186 /GB=CAB01178.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YIK6 like
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 94      6grp_total > 96      4grp_total > 17      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 257.7
(-3)
P 		413.3
(0.4)
P 		261.2
(-2.9)
P 		529.5
(3)
P 		272
B 288.5
(-2.5)
P 		271.9
(-3)
P 		370.5
(-0.3)
P 		489.3
(3)
P 		217
C 311.6
(-2.9)
P 		365.8
(-0.9)
P 		307.6
(-3)
P 		475.4
(3)
P 		168
avr 285.9
(-3) 		350.3
(-1.2) 		313.1
(-2.2) 		498.1
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 496.2
(-2.5)
P 		470.7
(-3)
P 		470.8
(-3)
P 		527.3
(-1.9)
P 		685.4
(1.3)
P 		772.3
(3)
P 		302
B 450.5
(-1.7)
P 		357.9
(-3)
P 		452.2
(-1.6)
P 		488.9
(-1.1)
P 		645.9
(1.2)
P 		770.1
(3)
P 		412
C 456.1
(-2.4)
P 		422.9
(-3)
P 		466.5
(-2.2)
P 		657.9
(1.1)
P 		660.6
(1.1)
P 		770.1
(3)
P 		347
avr 467.6
(-2.1) 		417.2
(-3) 		463.2
(-2.2) 		558
(-0.6) 		664
(1.2) 		770.8
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 93.8
(3)
P 		89.7
(2)
P 		68.3
(-3)
P 		77.5
(-0.8)
P 		26
B 92
(1)
P 		67.2
(-3)
P 		85.8
(0)
P 		104.3
(3)
P 		37
C 103.1
(2.1)
P 		105.2
(2.6)
P 		107.2
(3)
P 		80.2
(-3)
P 		27
avr 96.3
(3) 		87.4
(-2.8) 		87.1
(-3) 		87.3
(-2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 91.5
(-3)
P 		167.4
(0.9)
P 		102.5
(-2.4)
P 		133.7
(-0.8)
P 		206.8
(3)
P 		188
(2)
P 		115
B 156.7
(-1.4)
P 		119.1
(-2.7)
P 		109.8
(-3)
P 		129.5
(-2.3)
P 		262.4
(2.2)
P 		287.2
(3)
P 		177
C 169.1
(-0.8)
P 		129
(-2.6)
P 		118.7
(-3)
P 		132.3
(-2.4)
P 		213.8
(1.1)
P 		257.8
(3)
P 		139
avr 139.1
(-1.7) 		138.5
(-1.7) 		110.3
(-3) 		131.8
(-2) 		227.7
(2.3) 		244.3
(3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9789
Sequence Type Exemplar sequence
Representative Public ID F38H4.10 NCBI
Target Description F38H4.10 /REP_DB=WormBase Gene ID /WP=CE10076 /TR=Q20186 /GB=CAB01178.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YIK6 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069847 NCBI Caenorhabditis elegans F38H4.10 (F38H4.10) mRNA, complete cds. 11/11 None
SNAP00000007684 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11860528:11862381:1 11/11 None
GENEFINDER00000007692 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11860528:11862381:1 11/11 None
F38H4.10 ENSEMBL cdna:known chromosome:CEL140:IV:11860525:11862464:1 gene:F38H4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11860533-11862387(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YIK6 like
Ensembl F38H4.10
Entrez Gene 185482 Entrez gene
SwissProt Q20186 EMBL-EBI
WormBase CE32887 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01178 Hypothetical protein F38H4.10 [Caenorhabditis elegans] ref|NP_502248.2| F38H4.10 [Caenorhabditis elegans] 1.0E-109
blast CAE62136 Hypothetical protein CBG06180 [Caenorhabditis briggsae] 2.0E-93
blast AAT76373 putative Mob1/phocein family protein [Oryza sativa (japonica cultivar-group)] 6.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR005301 EMBL-EBI Mob1/phocein family 3.8E-70
Sequence
Target Sequence 
>C. ELEGANS:192825_AT
gcaatccaatggcagtttcaacgttaggaagtggaaatcttcgtgacgctctgaaacttc
caccaggggaagataaaaatgaatggctcgccgtaaatagtaaactgaacacaagtgctc
ctcaatacattgatctatcgctcactgcatgccaaaacaatgtcgacgacgaaaacgtgt
tcccatcggaaatcggaaaacaattccccacggactttgaggaacgttgtcaagcaatta
tgaggagactgttcagaatctatgctcacgtctattttgcccatgtcaatcacttcaaag
ctatcaaggccttggcacacctgaacacatcgttcaaacagttcgttctattcgccaatc
aattccaacttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATCCAATGGCAGTTTCAACGTT 552 319 38 Antisense
CTTCGTGACGCTCTGAAACTTCCAC 487 217 76 Antisense
AATACATTGATCTATCGCTCACTGC 681 171 161 Antisense
ATCGCTCACTGCATGCCAAAACAAT 220 37 174 Antisense
GACGACGAAAACGTGTTCCCATCGG 390 375 202 Antisense
TCCCCACGGACTTTGAGGAACGTTG 662 577 242 Antisense
ATCTATGCTCACGTCTATTTTGCCC 187 31 295 Antisense
ATTTTGCCCATGTCAATCACTTCAA 113 15 311 Antisense
TCAAGGCCTTGGCACACCTGAACAC 204 631 341 Antisense
AAACAGTTCGTTCTATTCGCCAATC 60 127 373 Antisense
TATTCGCCAATCAATTCCAACTTCT 218 665 386 Antisense
Sequence Source Affymetrix Proprietary Database